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root/BioCocoa/BioSwarm/trunk/Models/SubcellularElementModel.m
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Revision 350 - (view) (annotate) - [select for diffs]
Modified Wed Aug 19 16:45:07 2015 UTC (4 years, 9 months ago) by schristley
File length: 219520 byte(s)
Diff to previous 349
MPI timing
Revision 349 - (view) (annotate) - [select for diffs]
Modified Tue Mar 31 18:33:37 2015 UTC (5 years, 1 month ago) by schristley
File length: 218930 byte(s)
Diff to previous 348
new pairwise ScEM algorithm, tweaks for float precisions errors
Revision 348 - (view) (annotate) - [select for diffs]
Modified Fri Mar 20 19:45:20 2015 UTC (5 years, 2 months ago) by schristley
File length: 237572 byte(s)
Diff to previous 347
bounds check, float precision tweak
Revision 347 - (view) (annotate) - [select for diffs]
Modified Tue Mar 17 21:06:35 2015 UTC (5 years, 2 months ago) by schristley
File length: 238598 byte(s)
Diff to previous 346
more 3D MPI
Revision 346 - (view) (annotate) - [select for diffs]
Modified Mon Mar 16 18:58:49 2015 UTC (5 years, 2 months ago) by schristley
File length: 234610 byte(s)
Diff to previous 345
initial 3D MPI work
Revision 345 - (view) (annotate) - [select for diffs]
Modified Mon Mar 16 17:19:47 2015 UTC (5 years, 2 months ago) by schristley
File length: 208155 byte(s)
Diff to previous 344
change readOnlySectorBorder to a flag
Revision 344 - (view) (annotate) - [select for diffs]
Modified Tue Mar 3 19:56:46 2015 UTC (5 years, 2 months ago) by schristley
File length: 208286 byte(s)
Diff to previous 343
working MPI ScEM code
Revision 343 - (view) (annotate) - [select for diffs]
Modified Tue Feb 24 17:34:57 2015 UTC (5 years, 3 months ago) by schristley
File length: 208207 byte(s)
Diff to previous 342
MPI init and F1 with gather and scatter
Revision 342 - (view) (annotate) - [select for diffs]
Modified Thu Feb 19 17:49:35 2015 UTC (5 years, 3 months ago) by schristley
File length: 207967 byte(s)
Diff to previous 341
working gather and MPI communication
Revision 341 - (view) (annotate) - [select for diffs]
Modified Thu Feb 12 22:10:36 2015 UTC (5 years, 3 months ago) by schristley
File length: 207709 byte(s)
Diff to previous 340
add MPI code generator
Revision 340 - (view) (annotate) - [select for diffs]
Modified Wed Feb 11 21:39:45 2015 UTC (5 years, 3 months ago) by schristley
File length: 178674 byte(s)
Diff to previous 339
some initial MPI work
Revision 339 - (view) (annotate) - [select for diffs]
Modified Fri Feb 6 17:23:19 2015 UTC (5 years, 3 months ago) by schristley
File length: 169399 byte(s)
Diff to previous 338
add -initializeFileCompleted
Revision 338 - (view) (annotate) - [select for diffs]
Modified Tue Feb 3 22:58:07 2015 UTC (5 years, 3 months ago) by schristley
File length: 169177 byte(s)
Diff to previous 337
read only sector border
Revision 337 - (view) (annotate) - [select for diffs]
Modified Mon Feb 2 19:29:39 2015 UTC (5 years, 3 months ago) by schristley
File length: 162586 byte(s)
Diff to previous 336
sector border
Revision 336 - (view) (annotate) - [select for diffs]
Modified Fri Jan 30 20:53:30 2015 UTC (5 years, 3 months ago) by schristley
File length: 158953 byte(s)
Diff to previous 335
coordinate translation for MPI
Revision 335 - (view) (annotate) - [select for diffs]
Modified Thu Dec 4 18:33:39 2014 UTC (5 years, 5 months ago) by schristley
File length: 155833 byte(s)
Diff to previous 334
initial MPI controller
Revision 334 - (view) (annotate) - [select for diffs]
Modified Tue Dec 2 18:22:46 2014 UTC (5 years, 5 months ago) by schristley
File length: 155827 byte(s)
Diff to previous 332
interface model
Revision 332 - (view) (annotate) - [select for diffs]
Modified Fri Oct 24 18:37:34 2014 UTC (5 years, 7 months ago) by schristley
File length: 155678 byte(s)
Diff to previous 330
new sector-based GPU algorithm for ScEM
Revision 330 - (view) (annotate) - [select for diffs]
Modified Wed Jun 25 18:12:28 2014 UTC (5 years, 11 months ago) by schristley
File length: 136026 byte(s)
Diff to previous 295
rework SEM code, add mesh SEM
Revision 295 - (view) (annotate) - [select for diffs]
Modified Fri May 3 15:42:32 2013 UTC (7 years ago) by schristley
File length: 138121 byte(s)
Diff to previous 280
clean up use of NSUInteger and other compiler warnings
Revision 280 - (view) (annotate) - [select for diffs]
Modified Mon Mar 4 21:36:56 2013 UTC (7 years, 2 months ago) by schristley
File length: 138165 byte(s)
Diff to previous 278
remove old code, initial support for ReactionStructureMCMC and DiffusionModel, move encodings from Grid2DArray into BioSwarm Model
Revision 278 - (view) (annotate) - [select for diffs]
Modified Wed Dec 12 22:31:42 2012 UTC (7 years, 5 months ago) by schristley
File length: 138198 byte(s)
Diff to previous 275
updates for new model interface
Revision 275 - (view) (annotate) - [select for diffs]
Modified Wed Oct 3 18:18:29 2012 UTC (7 years, 7 months ago) by schristley
File length: 136916 byte(s)
Diff to previous 274
GNUstep fixes
Revision 274 - (view) (annotate) - [select for diffs]
Modified Wed Oct 3 18:17:34 2012 UTC (7 years, 7 months ago) by schristley
File length: 136808 byte(s)
Diff to previous 273
fix memory leak
Revision 273 - (view) (annotate) - [select for diffs]
Modified Wed Oct 3 16:34:13 2012 UTC (7 years, 7 months ago) by schristley
File length: 136734 byte(s)
Diff to previous 271
clear event schedule, allow perturbation of parameter
Revision 271 - (view) (annotate) - [select for diffs]
Modified Fri Sep 28 16:27:09 2012 UTC (7 years, 8 months ago) by schristley
File length: 135324 byte(s)
Diff to previous 263
initial MathML support, move data encode and species into generic BioSwarmModel
Revision 263 - (view) (annotate) - [select for diffs]
Modified Mon Jul 2 16:31:34 2012 UTC (7 years, 10 months ago) by schristley
File length: 134026 byte(s)
Diff to previous 262
element center forces, povray settings
Revision 262 - (view) (annotate) - [select for diffs]
Modified Wed Jun 20 20:12:09 2012 UTC (7 years, 11 months ago) by schristley
File length: 120317 byte(s)
Diff to previous 261
multiple model support for ScEM
Revision 261 - (view) (annotate) - [select for diffs]
Modified Thu Jun 14 16:00:51 2012 UTC (7 years, 11 months ago) by schristley
File length: 111497 byte(s)
Diff to previous 260
support for initialization file, multiple forces between element types in ScEM
Revision 260 - (view) (annotate) - [select for diffs]
Modified Wed Jun 6 19:25:27 2012 UTC (7 years, 11 months ago) by schristley
File length: 97580 byte(s)
Diff to previous 259
initialization file and update povray code generation
Revision 259 - (view) (annotate) - [select for diffs]
Modified Wed May 30 16:32:24 2012 UTC (7 years, 11 months ago) by schristley
File length: 95815 byte(s)
Diff to previous 256
update SEM for hierarchical model
Revision 256 - (view) (annotate) - [select for diffs]
Modified Wed May 23 15:29:47 2012 UTC (8 years ago) by schristley
File length: 94346 byte(s)
Diff to previous 254
ES reworked for hierarchical model
Revision 254 - (view) (annotate) - [select for diffs]
Modified Wed May 9 17:47:31 2012 UTC (8 years ago) by schristley
File length: 96901 byte(s)
Diff to previous 251
disable swarm for gnustep
Revision 251 - (view) (annotate) - [select for diffs]
Modified Mon Apr 23 20:39:02 2012 UTC (8 years, 1 month ago) by schristley
File length: 96877 byte(s)
Diff to previous 250
initial integration with Swarm
Revision 250 - (view) (annotate) - [select for diffs]
Modified Fri Mar 16 16:22:48 2012 UTC (8 years, 2 months ago) by schristley
File length: 94009 byte(s)
Diff to previous 245
add 2D ScEM
Revision 245 - (view) (annotate) - [select for diffs]
Modified Wed Mar 7 20:39:14 2012 UTC (8 years, 2 months ago) by schristley
File length: 80343 byte(s)
Diff to previous 242
update subcellular element method
Revision 242 - (view) (annotate) - [select for diffs]
Modified Wed Feb 29 21:49:11 2012 UTC (8 years, 2 months ago) by schristley
File length: 79361 byte(s)
Diff to previous 239
pass in both start and end time for invoke
Revision 239 - (view) (annotate) - [select for diffs]
Modified Tue Feb 21 22:47:54 2012 UTC (8 years, 3 months ago) by schristley
File length: 79284 byte(s)
Diff to previous 192
modularize RK kernels, change time to actual time versus iterations
Revision 192 - (view) (annotate) - [select for diffs]
Added Tue Mar 1 20:48:29 2011 UTC (9 years, 2 months ago) by schristley
File length: 78993 byte(s)
inital version of BioSwarm

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