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Revision: 1.1.1.1 (vendor branch)
Committed: Mon Aug 23 19:36:28 2004 UTC (15 years, 7 months ago) by malay
Branch: MAIN
CVS Tags: HEAD, HEAD
Changes since 1.1: +0 -0 lines
Log Message:
First import

Line File contents
1 <html>
2
3 <head>
4 <meta http-equiv="content-type" content="text/html;charset=iso-8859-1">
5 <meta name="author" content="Dr Malay K Basu">
6 <title>SeWeR:Home</title>
7
8 <script language="JavaScript" src="scripts/browser.js"></script>
9 <script language="JavaScript"><!--
10 function makeimage(source){
11
12 img=new Image();
13 img.src=source;
14 return img;
15 }
16 var nucleic=makeimage("images/nucleic.png");
17 var nucleic_over=makeimage("images/nucleic1.png");
18 var protein=makeimage("images/protein.png");
19 var protein_over=makeimage("images/protein1.png");
20 var pcr=makeimage("images/pcr.png");
21 var pcr_over=makeimage("images/pcr1.png");
22 var tools=makeimage("images/tools.png");
23 var tools_over=makeimage("images/tools1.png");
24 var database=makeimage("images/database.png");
25 var database_over=makeimage("images/database1.png");
26 var align=makeimage("images/align.png");
27 var align_over=makeimage("images/align1.png");
28 var bookmark=makeimage("images/bookmarklet.png");
29 var bookmark_over=makeimage("images/bookmarklet1.png");
30 var custom=makeimage("images/custom.png");
31 var custom_over=makeimage("images/custom1.png");
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33 isIE4=(document.all)?true:false;
34 isNS6=false;
35 if(!isIE4 && document.getElementById){
36 isNS6=true;
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38 function makeMenu(name){
39 this.name=name;
40 this.css=(isNS4)?eval('document.'+name):eval('document.all.'+name+'.style');
41 this.hideit=hideit;
42 this.showit=showit;
43 this.vis=vis;
44 return this;
45 }
46 function showit(){
47 this.css.visibility="visible"}
48 function hideit(){
49 this.css.visibility="hidden"}
50 function vis(){
51 if(this.css.visibility=="hidden"||this.css.visibility=="hide") return true;
52 }
53
54 function imageOff(name){
55
56 document.images[name].src=eval(name).src;
57 hide();
58 }
59 function imageOn(name){
60
61 document.images[name].src=eval(name+'_over').src;
62 }
63 function show(divname){
64 for(i=0;i<menu.length;i++){
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71 function hide(){
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74
75 function gotoprogram(){
76 name=(document.programlistform.programlist[document.programlistform.programlist.selectedIndex].value);
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78 window.location.href=name+'.htm'}
79 }
80 function init(){
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84 menu=new Array();
85 menu[0]=new makeMenu("nucleicdiv");
86 menu[1]=new makeMenu("proteindiv");
87 menu[2]=new makeMenu("databasediv");
88 menu[3]=new makeMenu("pcrdiv");
89 menu[4]=new makeMenu("aligndiv");
90 menu[5]=new makeMenu("toolsdiv");
91 menu[6]=new makeMenu("bookmarkdiv");
92 menu[7]=new makeMenu("customdiv");
93 for(i=0;i<menu.length;i++){
94 //alert("Hiding menu");
95 menu[i].hideit();
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97 // -->
98 </script>
99
100 </head>
101
102 <body bgcolor="white" topmargin="0" leftmargin="0" marginheight="0" marginwidth="0" alink="red" vlink="red" link="#cc0000" onload="init()">
103 <table cellspacing="0" cellpadding="0" border="0">
104 <tr>
105 <td width="10" valign="top" bgcolor="#cc0000" rowspan="99">&nbsp;</td>
106 <td valign="top" bgcolor="black" rowspan="99"><table border="0" cellpadding="0" cellspacing="0" width="130">
107 <tr height="5">
108 <form>
109 <td height="5" align="center" valign="middle"><spacer type="block" width="32" height="5"></td>
110 </form>
111 </tr>
112 <tr height="1">
113 <td height="1" bgcolor="#cc0000"><spacer type="block" width="1" height="1"></td>
114 </tr>
115 <tr>
116 <form name="programlistform">
117 <td align="center" valign="middle" class="size1">
118 <select name="programlist" size="1" onChange="gotoprogram()">
119 <option value="" selected>Go to Program
120 <option value="database">BLASTN
121 <option value="database">BLASTP
122 <option value="database">Translated Blast
123 <option value="database">BLOCKS Search
124 <option value="align">Block Maker
125 <option value="tools">CAP
126 <option value="align">ClustalW
127 <option value="pcr">Codehop
128 <option value="nucleicacid">Entrez Nucleotide
129 <option value="protein">Entrez Protein
130 <option value="nucleicacid">GeneMark
131 <option value="pcr">Primer3
132 <option value="nucleicacid">Protein Machine
133 <option value="protein">ProtParam
134 <option value="protein">PSIPred
135 <option value="database">PubMed
136 <option value="tools">ReadSeq
137 <option value="database">ScanProsite
138 <option value="nucleicacid">Webcutter
139 </select>
140 </td>
141 </form>
142 </tr>
143 <tr height="1">
144 <td bgcolor="#cc0000" height="1"><spacer type="block" width="32" height="1"></td>
145 </tr>
146 <tr>
147 <td width="140">
148 <table border="0" cellpadding="0" cellspacing="0">
149 <tr height="20">
150 <td height="20" width="10"></td>
151 <td height="20"></td>
152 </tr>
153 <tr>
154 <td width="10"><spacer type="block" width="10" height="1"></td>
155 <td><img height="11" width="6" src="images/arrow_red.png"><a href="nucleicacid.htm" onMouseOver="imageOn('nucleic');show('nucleicdiv')" onMouseOut="imageOff('nucleic')"><img name="nucleic" height="11" width="59" border="0" src="images/nucleic.png"></a></td>
156 </tr>
157 <tr height="1">
158 <td height="1" colspan="2" bgcolor="#cc0000"><spacer type="block" width="32" height="1"></td>
159 </tr>
160 <tr height="10">
161 <td height="10" width="10"></td>
162 <td height="10"></td>
163 </tr>
164 <tr>
165 <td width="10"></td>
166 <td><img height="11" width="6" src="images/arrow_red.png"><a href="protein.htm" onMouseOver="imageOn('protein');show('proteindiv')" onMouseOut="imageOff('protein')"><img name="protein" border="0" height="10" width="35" src="images/protein.png"></a></td>
167 </tr>
168 <tr height="1">
169 <td colspan="2" bgcolor="#cc0000" height="1"><spacer type="block" width="1" height="1"></td>
170 </tr>
171 <tr height="10">
172 <td height="10" width="10"></td>
173 <td height="10"></td>
174 </tr>
175 <tr>
176 <td width="10"></td>
177 <td><img height="11" width="6" src="images/arrow_red.png"><a href="database.htm" onMouseOver="imageOn('database');show('databasediv')" onMouseOut="imageOff('database')"><img name="database" border="0" height="11" width="43" src="images/database.png"></a></td>
178 </tr>
179 <tr height="1">
180 <td height="1" colspan="2" bgcolor="#cc0000"><spacer type="block" width="1" height="1"></td>
181 </tr>
182 <tr height="10">
183 <td height="10" width="10"></td>
184 <td height="10"></td>
185 </tr>
186 <tr>
187 <td width="10"></td>
188 <td><img height="11" width="6" src="images/arrow_red.png"><a href="pcr.htm" onMouseOver="imageOn('pcr');show('pcrdiv')" onMouseOut="imageOff('pcr')"><img name="pcr" border="0" height="10" width="19" src="images/pcr.png"></a></td>
189 </tr>
190 <tr height="1">
191 <td height="1" colspan="2" bgcolor="#cc0000"><spacer type="block" width="1" height="1"></td>
192 </tr>
193 <tr height="10">
194 <td height="10" width="10"></td>
195 <td height="10"></td>
196 </tr>
197 <tr>
198 <td width="10"></td>
199 <td><img height="11" width="6" src="images/arrow_red.png"><a href="align.htm" onMouseOver="imageOn('align');show('aligndiv')" onMouseOut="imageOff('align')"><img name="align" border="0" height="14" width="49" src="images/align.png"></a></td>
200 </tr>
201 <tr height="1">
202 <td height="1" colspan="2" bgcolor="#cc0000"><spacer type="block" width="1" height="1"></td>
203 </tr>
204 <tr height="10">
205 <td height="10" width="10"></td>
206 <td height="10"></td>
207 </tr>
208 <tr>
209 <td width="10"></td>
210 <td><img height="11" width="6" src="images/arrow_red.png"><a href="tools.htm" onMouseOver="imageOn('tools');show('toolsdiv')" onMouseOut="imageOff('tools')"><img name="tools" border="0" height="11" width="24" src="images/tools.png"></a></td>
211 </tr>
212 <tr height="1">
213 <td height="1" colspan="2" bgcolor="#cc0000"><spacer type="block" width="1" height="1"></td>
214 </tr>
215 <tr height="10">
216 <td height="10" width="10"></td>
217 <td height="10"></td>
218 </tr>
219 <tr>
220 <td width="10"></td>
221 <td><img height="11" width="6" src="images/arrow_red.png"><a href="bookmarklet.htm" onMouseOver="imageOn('bookmark');show('bookmarkdiv')" onMouseOut="imageOff('bookmark')"><img name="bookmark" border="0" height="11" width="65" src="images/bookmarklet.png"></a></td>
222 </tr>
223 <tr height="1">
224 <td height="1" colspan="2" bgcolor="#cc0000"><spacer type="block" width="1" height="1"></td>
225 </tr>
226 <tr height="10">
227 <td height="10" width="10"></td>
228 <td height="10"></td>
229 </tr>
230 <tr>
231 <td width="10"></td>
232 <td><img height="11" width="6" src="images/arrow_red.png"><a href="custom.htm" onMouseOver="imageOn('custom');show('customdiv')" onMouseOut="imageOff('custom')"><img name="custom" border="0" height="13" width="69" src="images/custom.png"></a></td>
233 </tr>
234 <tr height="1">
235 <td height="1" colspan="2" bgcolor="#cc0000"><spacer type="block" width="1" height="1"></td>
236 </tr>
237 </table>
238 <table border="0" cellpadding="0" cellspacing="0">
239 <tr height="120">
240 <td width="140" height="120"><spacer type="block" width="40" height="120"></td>
241 </tr>
242 <tr height="1">
243 <td width="140" height="1" align="center" bgcolor="#cc0000"><spacer type="block" width="1" height="1"></td>
244 </tr>
245 <tr height="10">
246 <td width="140" height="10" align="center"><spacer type="block" width="32" height="10"></td>
247 </tr>
248 <tr>
249 <td class="size1" width="140" align="center"><a href="http://bioinformatics.org/sewer/dist/sewer-3.0.tar.gz"><img height="69" width="89" src="images/download.png" border="0" alt="Download SeWeR on your computer">
250 </a><br>
251 <br>
252 <font color="white">Size ~300K, when unzipped. Unzip the archive and
253 start &quot;sewer.htm&quot; in your browser.</font></td>
254 </tr>
255 <tr height="10">
256 <td width="140" height="10"><spacer type="block" width="32" height="10"></td>
257 </tr>
258 <tr height="1">
259 <td width="140" height="1" bgcolor="#cc0000"><spacer type="block" width="32" height="1"></td>
260 </tr>
261 </table>
262 </td>
263 </tr>
264 </table>
265 <table border="0" cellpadding="0" cellspacing="0" width="136">
266 <tr height="5">
267 <td width="5" height="5">&nbsp;</td>
268 <td width="12" height="5">&nbsp;</td>
269 <td height="5" width="113">&nbsp;</td>
270 <td width="6" height="5">&nbsp;</td>
271 </tr>
272 <tr>
273 <td class="size1" colspan="4" align="center"><a href="mirror.htm"><img height="25" width="89" src="images/mirrors.png" alt="World-Wide Mirrors of SeWeR" border="0"></a></td>
274 </tr>
275 <tr>
276 <td width="5" valign="top">&nbsp;</td>
277 <td width="12" valign="top"><font color="#cc0000">&middot;</font></td>
278 <td class="size1" width="113"><a href="http://iubio.bio.indiana.edu/webapps/SeWeR/" target="_blank">IUBIO
279 archive</a></td>
280 <td width="6">&nbsp;</td>
281 </tr>
282 <tr>
283 <td width="5" valign="top">&nbsp;</td>
284 <td width="12" valign="top"><font color="#cc0000">&middot;</font></td>
285 <td class="size1" width="113"><a href="http://www.bioinformatics.org/SeWeR/" target="_blank">The
286 Open Lab</a></td>
287 <td width="6">&nbsp;</td>
288 </tr>
289 <tr height="5">
290 <td width="5" height="5">&nbsp;</td>
291 <td width="12" height="5" valign="top"><font color="#cc0000">&middot;</font></td>
292 <td height="5" class="size1" width="113"><a href="http://www.cmbi.kun.nl/bioinf/tools/sewer/" target="_blank">CMBI,
293 dutch EMBnet node</a></td>
294 <td width="6" height="5">&nbsp;</td>
295 </tr>
296
297 <tr height="5">
298 <td width="5" height="5">&nbsp;</td>
299 <td width="12" height="5" valign="top"><font color="#cc0000">&middot;</font></td>
300 <td height="5" class="size1" width="113"><a href="http://cgat.ukm.my/sewer/" target="_blank">CGAT</a></td>
301 <td width="6" height="5">&nbsp;</td>
302 </tr>
303 <tr height="5">
304 <td width="5" height="5">&nbsp;</td>
305 <td width="12" height="5" valign="top"><font color="#cc0000">&middot;</font></td>
306 <td height="5" class="size1" width="113"><a href="http://www.eur.nl/fgg/ch1/sewer/sewer.htm" target="_blank">Erasmus
307 University</a></td>
308 <td width="6" height="5">&nbsp;</td>
309 </tr>
310 <tr height="5">
311 <td width="5" height="5">&nbsp;</td>
312 <td width="12" height="5" valign="top"><font color="#cc0000">&middot;</font></td>
313 <td height="5" class="size1" width="113"><a href="http://bio.ifom-firc.it/TOOLS/sewer/sewer.htm" target="_blank">IFOM, Italy</a></td>
314 <td width="6" height="5">&nbsp;</td>
315 </tr>
316 <tr height="5">
317 <td width="5" height="5">&nbsp;</td>
318 <td width="12" height="5" valign="top"><font color="#cc0000">&middot;</font></td>
319 <td height="5" class="size1" width="113"><a href="http://ingene.upm.edu.my/SeWeR/" target="_blank">Universiti Putra, Malaysia</a></td>
320 <td width="6" height="5">&nbsp;</td>
321 </tr>
322 <tr height="5">
323 <td width="5" height="5">&nbsp;</td>
324 <td width="12" height="5" valign="top"><font color="#cc0000">&middot;</font></td>
325 <td height="5" class="size1" width="113"><a href="http://allserv.rug.ac.be/~jvdesomp/sewer/sewer.htm" target="_blank">Ghent University Hospital, Belgium
326 </a></td>
327 <td width="6" height="5">&nbsp;</td>
328 </tr>
329
330 <tr height="5">
331 <td width="5" height="5">&nbsp;</td>
332 <td width="12" height="5" valign="top"><font color="#cc0000">&middot;</font></td>
333 <td height="5" class="size1" width="113"><a href="http://www.bio-soft.net/sewer/sewer.htm" target="_blank">Chinese version at Biosoft.net
334 </a></td>
335 <td width="6" height="5">&nbsp;</td>
336 </tr>
337 </table>
338 </td>
339 <td bgcolor="#999999" width="4" rowspan="99"><spacer type="block" width="4" height="1"></td>
340 <td valign="top"><table border="0" cellpadding="20" cellspacing="0" width="400">
341 <tr>
342 <td align="center" valign="middle"><img height="108" width="285" src="images/sewergraphics.png"></td>
343 </tr>
344 </table>
345 <table border="0" cellpadding="0" cellspacing="0" width="400">
346 <tr height="3">
347 <td colspan="4" bgcolor="#999999"><spacer type="block" width="1" height="3"></td>
348 </tr>
349 <tr>
350 <td colspan="4" class="size3" align="center" bgcolor="#cc0000"><font color="#ffffff"><b>This
351 is version 3.0</b></font> </td>
352 </tr>
353 <tr height="3">
354 <td colspan="4" bgcolor="#999999"><spacer type="block" width="1" height="3"></td>
355 </tr>
356 <tr height="10">
357 <td height="10" colspan="4"><spacer type="block" width="1" height="10"></td>
358 </tr>
359 <tr>
360 <td width="14">&nbsp;</td>
361 <td width="114" valign="middle" align="center"><img height="61" width="26" src="images/question.png"></td>
362 <td class="body" valign="top" width="255"><font color="#cc0000"><b>What is
363 SeWeR?</b></font><br>
364 SeWeR is an acronym, stands for <b>SEquence analysis using WEb Resources</b>.
365 In addition to its common *dirty* use, the word SeWeR also has two meanings-
366 first, <b>&quot;a medieval servant or household officer of high rank in
367 charge of serving dishes at the table and sometimes of seating and tasting&quot;</b>
368 and the second one, <b>&quot;one who sews&quot;</b>.<b> </b>SeWeR fits all
369 of these definitions. First, it is <b>*dirty*</b> at the code level. Second,
370 <b>it serves</b>. It serves you a single door to all the common web-based
371 services for sequence analysis. And <b>it sews</b>. It sews all these services
372 together. For a refined mind, SeWeR is <b>an integrated portal to common
373 web-based services in bioinformatics</b>.</td>
374 <td width="17"></td>
375 </tr>
376 <tr height="10">
377 <td width="14" height="10"></td>
378 <td width="114" height="10"></td>
379 <td height="10" width="255"></td>
380 <td width="17" height="10"></td>
381 </tr>
382 <tr height="1">
383 <td height="1" colspan="4" bgcolor="#cccccc"><spacer type="block" width="32" height="1"></td>
384 </tr>
385 <tr height="10">
386 <td width="14" height="10"></td>
387 <td width="114" height="10"></td>
388 <td height="10" width="255"></td>
389 <td width="17" height="10"></td>
390 </tr>
391 <tr height="15">
392 <td width="14" height="15"></td>
393 <td width="114" height="15" align="center" valign="middle"><img height="61" width="26" src="images/question.png"></td>
394 <td class="body" height="15" valign="top" width="255"><font color="#cc0000"><b>Who
395 can use SeWeR?</b></font><br>
396 SeWeR is cross-browser DHTML. <b>It is written entirely in JavaScript1.2</b>.
397 Hence <b>it will run only in Netscape 4.0 or higher and Internet Explorer
398 4.0 or higher</b>. I have taken all the precautions so that it runs on all
399 the platforms in these two browsers. But DHTML is still in its infancy and
400 implementation by browser vendors are at its best rudimentary and are full
401 of bugs. If you find one please let me know. Other browser users are on
402 their own.</td>
403 <td width="17" height="15"></td>
404 </tr>
405 <tr height="10">
406 <td width="14" height="10"></td>
407 <td width="114" height="10"></td>
408 <td height="10" width="255"></td>
409 <td width="17" height="10"></td>
410 </tr>
411 <tr height="1">
412 <td height="1" colspan="4" bgcolor="#cccccc"><spacer type="block" width="32" height="1"></td>
413 </tr>
414 <tr height="10">
415 <td width="14" height="10"></td>
416 <td width="114" height="10"></td>
417 <td height="10" width="255"></td>
418 <td width="17" height="10"></td>
419 </tr>
420 <tr height="1">
421 <td width="14" height="1"></td>
422 <td width="114" height="1" align="center" valign="middle"><img height="61" width="26" src="images/question.png"></td>
423 <td class="body" height="1" valign="top" width="255"><font color="#cc0000"><b>Why
424 SeWeR?</b></font><br>
425 SeWeR is object-oriented. It is designed in such a manner that it can be
426 updated and customized very easily. Sometimes, customizing a web-based service
427 is as easy as saving a page. SeWeR is primarily designed to be hosted in
428 Intranet and to run as a stand-alone application in your browser. <b>It
429 doesn't require any server to host itself</b>. <b>The goal of SeWeR is to
430 turn your web-browser into a powerful sequence-analysis tool</b>.</td>
431 <td width="17" height="1"></td>
432 </tr>
433 <tr height="10">
434 <td width="14" height="10"></td>
435 <td width="114" height="10"></td>
436 <td height="10" width="255"></td>
437 <td width="17" height="10"></td>
438 </tr>
439 <tr height="1">
440 <td height="1" bgcolor="#cccccc" colspan="4"><spacer type="block" width="32" height="1"></td>
441 </tr>
442 <tr height="10">
443 <td width="14"></td>
444 <td width="114"></td>
445 <td width="255"></td>
446 <td width="17"></td>
447 </tr>
448 <tr height="1">
449 <td width="14" height="1"></td>
450 <td width="114" height="1" align="center" valign="middle"><img height="61" width="26" src="images/question.png"></td>
451 <td class="body" height="1" valign="top" width="255"><font color="#cc0000"><b>The
452 future of SeWeR?</b></font><br>
453 I have lot of plans
454 for it. But <b>like everything the future of SeWeR is uncertain and like
455 everything it depends on you...</b></td>
456 <td width="17" height="1"></td>
457 </tr>
458 <tr height="10">
459 <td height="10" colspan="4"></td>
460 </tr>
461 <tr height="1">
462 <td height="1" bgcolor="#cccccc" colspan="4"><spacer type="block" width="32" height="1"></td>
463 </tr>
464 <tr height="20">
465 <td width="14" height="20"><spacer type="block" width="15" height="20"></td>
466 <td width="114" height="20"></td>
467 <td height="20" width="255"></td>
468 <td width="17" height="20"></td>
469 </tr>
470 <tr>
471 <td width="14"></td>
472 <td colspan="2">
473 <table border="0" cellpadding="0" cellspacing="0" width="369">
474 <tr>
475 <td class="size1"> <font color="#cc0000"><b>Publication</b></font><br>
476 <b> Basu M K</b> (2001) SeWeR: a customizable and integrated dynamic
477 HTML interface to bioinformatics services. <i>Bioinformatics</i>.
478 <b>17</b>(6): 577-578.
479 <p><font color="#cc0000"><b>Downloading/Mirroring Information<br>
480 </b></font>SeWeR is feather-light! The whole package is just around
481 300K. You can even run it from a floppy. <a href="ftp://iubio.bio.indiana.edu/molbio/analyze/sewer.zip">Download</a>
482 the zip archive from IUBIO. Alternatively, you can download the archive from <a href="http://www.bioinformatics.org/sewer/sewer.zip">here</a>. Unzip it and run &quot;sewer.htm&quot; in your browser. You have to use a program that maintains the directory-structure
483 while unzipping. If you are planning to run SeWeR from a website
484 then maintain the directory structure and use &quot;sewer.htm&quot;
485 as start page which you can rename though, to any name of your choice.
486 <p><font color="#cc0000"><b>Present Mirrors</b></font><br>
487 The mirror list of SeWeR is getting so big that I had to make a
488 separate page for it. You can find the mirror list <a href="mirror.htm">here</a>.
489 <p><font color="#cc0000"><b>Why SeWeR is not compatible with Netscape 6?</b></font><br>
490 Netscape 6 has a bug that causes data loss while submitting hidden form. The structure of SeWeR is based on handling hidden form and therefore SeWeR at present is not compatible at all with Netscape 6. Use Netscape 7 instead.
491
492 </td>
493 </tr>
494 </table>
495 </td>
496 <td width="17"></td>
497 </tr>
498 <tr height="20">
499 <td width="14" height="20"><spacer type="block" width="15" height="20"></td>
500 <td width="114" height="20"></td>
501 <td height="20" width="255"></td>
502 <td width="17" height="20"></td>
503 </tr>
504 <tr height="1">
505 <td height="1" colspan="4" bgcolor="#999999"><spacer type="block" width="32" height="1"></td>
506 </tr>
507 <tr height="1">
508 <td width="14" height="1"></td>
509 <td class="size1" height="1" colspan="2" align="right">
510 <p><a href="home.htm">Home</a> | <a href="nucleicacid.htm">Nucleic Acid</a>
511 | <a href="protein.htm">Protein</a> | <a href="database.htm">Database</a>
512 | <a href="pcr.htm">PCR</a> | <a href="align.htm">Alignment</a> | <a href="tools.htm">Tools</a>
513 | <a href="bookmarklet.htm">Bookmarklets</a> | <a href="custom.htm">Customize</a></p>
514 <p><a href="copyright.htm"><font color="#666666">Copyright</font></a><font color="#666666">&copy;
515 2000, 2003, 2004<br>
516 Malay K Basu<br>
517 <a href="mailto:malay@bioinformatics.org">malay@bioinformatics.org</a><br>
518 </font><a href="copyright.htm"><font color="#666666">Disclaimer</font></a><font color="#666666"><br>
519 All programs, softwares, web-based services used in this software are
520 copyrighted by their authors or by the website hosting them. </font></p>
521 </td>
522 <td width="17" height="1"></td>
523 </tr>
524 </table></td>
525 <td width="1" bgcolor="#cc0000" rowspan="99"><spacer type="block" width="1" height="1"></td>
526 <td width="20" rowspan="99">&nbsp;</td>
527 <td valign="top"><table width="175" border="0" cellspacing="0" cellpadding="10">
528 <tr>
529 <td><a href="http://www.bioinformatics.org/savvy" target="_blank"><img src="images/savvylogosmall.png" width="116" height="116" border="0" alt="Run Savvy"></a></td>
530 </tr>
531 <tr>
532 <td class="size1">
533 SeWeR now generates graphics. <b><font color="#cc0000">Savvy</font></b>
534 is a plasmid drawing software that generates plasmid map in the revolutionary
535 Scalable Vector Graphics format from W3C.
536 </td>
537 </tr>
538 </table>
539 <p>
540 <table border="0" cellpadding="0" cellspacing="0" width="176" bgcolor="#e6e6e6">
541 <tr height="1">
542 <td height="1" colspan="5" bgcolor="#999999"><spacer type="block" width="32" height="1"></td>
543 </tr>
544 <tr>
545 <td width="1" rowspan="4" bgcolor="#999999"><spacer type="block" width="1" height="32"></td>
546 <td width="5">&nbsp;</td>
547 <td class="size1" width="166"><font color="#cc0000"><b>What's New in
548 SeWeR?</b></font></td>
549 <td width="5">&nbsp;</td>
550 <td width="1" rowspan="4" bgcolor="#999999"><spacer type="block" width="1" height="32"></td>
551 </tr>
552 <tr>
553 <td valign="top" width="1">&nbsp;</td>
554 <td class="size1" valign="top" width="166">SeWeR is now version 3.0. This is the first DOM compatible version of SeWeR. I almost completely rewrote the JavaScript engine. SeWeR now runs in almost all the major browsers.
555 <p>All the program links have been fixed.
556 </td>
557 <td width="5">&nbsp;</td>
558 </tr>
559 <tr height="5">
560 <td height="7" colspan="3"><spacer type="block" width="32" height="5"></td>
561 </tr>
562 <tr>
563 <td colspan="3" bgcolor="#999999" height="1"><spacer type="block" width="1" height="1"></td>
564 </tr>
565 </table><p><table border="0" cellpadding="0" cellspacing="0" bgcolor="#e6e6e6" width="175">
566 <tr height="1">
567 <td height="1" colspan="5" bgcolor="#cccccc"><spacer type="block" width="1" height="1"></td>
568 </tr>
569 <tr height="5">
570 <td width="1" rowspan="3" bgcolor="#cccccc"><spacer type="block" width="1" height="1"></td>
571 <td bgcolor="#cccccc" height="5" colspan="3"><spacer type="block" width="5" height="5"></td>
572 <td width="1" rowspan="3" bgcolor="#cccccc"><spacer type="block" width="1" height="1"></td>
573 </tr>
574 <tr>
575 <td width="5">&nbsp;</td>
576 <form action="http://www.pasteur.fr/cgi-bin/biology/bnb_s.pl" method="post" target="_blank">
577 <td class="size1" align="center"><b>Search <a href="http://www.pasteur.fr/recherche/BNB/bnb-comb-en.html">BioNetbook</a>
578 at Institut Pasteur</b><br>
579 <input type="text" name="query" size="15">
580 <br>
581 <select name="rsc" size="1">
582 <option value="banque">database
583 <option value="liste de ressources">resources index
584 <option value="bibliographie">bibliography
585 <option value="outils en ligne">online analysis tools
586 <option value="cours et tutoriels">courses and tutorials
587 <option value="forums et conférences">forums, meetings
588 <option value="archives">repositories
589 <option value="logiciel">software
590 <option value="histoire et culture">history and culture
591 </select>
592 <br>
593 <input type="submit" value="Go!" name="submit">
594 <input type="hidden" name="english" value="1">
595 </td>
596 </form>
597 <td width="5">&nbsp;</td>
598 </tr>
599 <tr height="5">
600 <td height="5" colspan="3"><spacer type="block" width="5" height="5"></td>
601 </tr>
602 <tr height="1">
603 <td height="1" colspan="5" bgcolor="#cccccc"><spacer type="block" width="1" height="1"></td>
604 </tr>
605 </table><p>
606 <table border="0" cellpadding="0" cellspacing="0" width="175" bgcolor="#e6e6e6">
607 <tr height="1">
608 <td height="1" colspan="5" bgcolor="#999999"><spacer type="block" width="32" height="1"></td>
609 </tr>
610 <tr>
611 <td width="1" rowspan="4" bgcolor="#999999"><spacer type="block" width="1" height="32"></td>
612 <td width="5">&nbsp;</td>
613 <td class="size1"><font color="#cc0000"><b>A word about SeWeR</b></font></td>
614 <td width="5">&nbsp;</td>
615 <td width="1" rowspan="4" bgcolor="#999999"><spacer type="block" width="1" height="32"></td>
616 </tr>
617 <tr>
618 <td valign="top">&nbsp;</td>
619 <td class="size1" valign="top">SeWeR can be downloaded and mirrored freely.
620 If you have mirrored SeWeR, then let me know, so that I can put a link here.
621 If you would like to have a service to be included in SeWeR, drop me a line.
622 I'll try to include it in future version. And of course if you've liked
623 SeWeR, or have disliked it, don't forget to talk about it.</td>
624 <td width="5">&nbsp;</td>
625 </tr>
626 <tr height="5">
627 <td height="5" colspan="3"><spacer type="block" width="32" height="5"></td>
628 </tr>
629 <tr>
630 <td colspan="3" bgcolor="#999999"><spacer type="block" width="1" height="1"></td>
631 </tr>
632 </table></td>
633 </tr>
634 </table>
635 <div id="nucleicdiv" class="menudiv">
636 Sequence Retrieval<br>
637 Restriction Analysis<br>
638 Translation<br>
639 Gene feature prediction</div>
640 <div id="proteindiv" class="menudiv">
641 Sequence Retrieval<br>
642 Primary Structure<br>
643 Secondary Structure<br>
644 Pattern Search</div>
645 <div id="databasediv" class="menudiv">
646 Entrez<br>
647 PubMed<br>
648 BLOCKS<br>
649 Prosite</div>
650 <div id="pcrdiv" class="menudiv">
651 Design primers<br>
652 Design oligos<br>
653 Degenerate primers</div>
654 <div id="aligndiv" class="menudiv">
655 Pairwise alignment<br>
656 Multiple alignment<br>
657 BLOCK maker</div>
658 <div id="toolsdiv" class="menudiv">
659 Sequence conversion<br>
660 Sequence Assembly<br>
661 </div>
662 <div id="bookmarkdiv" class="menudiv">
663 For PubMed<br>
664 For GenBank<br>
665 </div>
666 <div id="customdiv" class="menudiv">
667 Customize SeWeR
668 </div>
669 </body>
670
671 </html>