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branch created
code cleanup
fixed spurious debug output
fixes in typeing to pass MMFF validation suite
added call to type in rd_sdf, fixed problem in type_mmx
fixed bug in routine to recognize delocalized bonds in kbond.c
updated read_sdf type_mmx and first pass at using best practices
code merge 20081130
move mengine src to reflect new freemol directory structure
test
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