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full dynamic memory allocation of molecule
major rewrite - removing global data, adding electrostatics tag to read_sdf
code cleanup
added aromatic bonds in read_sdf removed TJO bailout
updated read_sdf type_mmx and first pass at using best practices
code merge 20081130
Add modification notice to files modified for Freemol per mengine/smi23d license requirements
move mengine src to reflect new freemol directory structure
Incoporate the parameter files mmff94.prm and mmxconst.prm into the mengine code by turning them into header files. Each line becomes a string array element that is parsed in place of lines in the .prm files. The .prm files are no longer needed, but are not deleted from the repository.
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