ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/gclib/cdbfasta/Makefile
Revision: 8
Committed: Mon Mar 22 22:11:25 2010 UTC (12 years, 6 months ago) by gpertea
File size: 1917 byte(s)
Log Message:
added cdbfasta source files

Line User Rev File contents
1 gpertea 8 # Useful directories
2    
3     THISCODEDIR := .
4     GCLDIR := ../gclib
5     # Directory where libz.a can be found
6     # (please build that first before making this package)
7     ZDIR := ../zlib
8     # Directories to search for header files
9     SEARCHDIRS := -I${ZDIR} -I${THISCODEDIR} -I${GCLDIR}
10    
11    
12     SYSTYPE := $(shell uname)
13    
14    
15     MACHTYPE := $(shell uname -m)
16     ifeq ($(MACHTYPE), i686)
17     MARCH = -march=i686
18     else
19     MARCH =
20     endif
21    
22     CC := g++
23     BASEFLAGS = -Wall ${SEARCHDIRS} $(MARCH) -DENABLE_COMPRESSION=1 -D_FILE_OFFSET_BITS=64 \
24     -D_LARGEFILE_SOURCE -fno-exceptions -fno-rtti -fno-strict-aliasing \
25     -D_REENTRANT
26    
27    
28     ifeq ($(findstring debug,$(MAKECMDGOALS)),)
29     DBGFLAGS = -O2 -DNDEBUG
30     LDFLAGS =
31     else
32     DBGFLAGS = -g -DDEBUG
33     LDFLAGS = -g
34     endif
35    
36     ifeq ($(findstring nommap,$(MAKECMDGOALS)),)
37     CFLAGS = $(DBGFLAGS) $(BASEFLAGS)
38     else
39     CFLAGS = $(DBGFLAGS) $(BASEFLAGS) -DNO_MMAP
40     endif
41    
42     %.o : %.c
43     ${CC} ${CFLAGS} -c $< -o $@
44    
45     %.o : %.cc
46     ${CC} ${CFLAGS} -c $< -o $@
47    
48     %.o : %.C
49     ${CC} ${CFLAGS} -c $< -o $@
50    
51     %.o : %.cpp
52     ${CC} ${CFLAGS} -c $< -o $@
53    
54     %.o : %.cxx
55     ${CC} ${CFLAGS} -c $< -o $@
56    
57     # C/C++ linker
58    
59     LINKER := g++
60     LDFLAGS = -L${ZDIR} -lz
61     #if ENABLE_COMPRESSION is not needed,
62     # LDFLAGS =
63    
64     .PHONY : all
65     all: cdbfasta cdbyank
66     debug: all
67     nommap: all
68     cdbfasta: ./cdbfasta.o ./gcdbz.o $(LIBS) ${GCLDIR}/gcdb.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o
69     ${LINKER} -o $@ ${filter-out %.a %.so, $^} $(LDFLAGS)
70    
71     cdbyank : ./cdbyank.o ./gcdbz.o ${GCLDIR}/gcdb.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o
72     ${LINKER} -o $@ ${filter-out %.a %.so, $^} $(LDFLAGS)
73    
74     # target for removing all object files
75    
76     .PHONY : tidy
77     tidy::
78     @${RM} core cdbfasta cdbyank *.o ${GCLDIR}/gcdb.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o
79    
80     # target for removing all object files
81    
82     .PHONY : clean
83     clean:: tidy
84     @${RM} core cdbfasta cdbyank *.o ${GCLDIR}/gcdb.o ${GCLDIR}/GBase.o ${GCLDIR}/GStr.o ${GCLDIR}/GArgs.o