ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/gclib/seqalign/GXAlign.cpp
Links to HEAD: (view) (annotate)
Sticky Revision:
Sort logs by:
Revision 89 - (view) (annotate) - [select for diffs]
Modified Mon Oct 3 18:42:24 2011 UTC (9 years, 7 months ago) by gpertea
File length: 27293 byte(s)
Diff to previous 87
separate wrappers for 5' and  3' alignments

Revision 87 - (view) (annotate) - [select for diffs]
Modified Sun Oct 2 19:12:03 2011 UTC (9 years, 7 months ago) by gpertea
File length: 25136 byte(s)
Diff to previous 86
disable pointer arithmetic in GXGreedyExtend(), it's bad

Revision 86 - (view) (annotate) - [select for diffs]
Modified Fri Sep 30 21:38:39 2011 UTC (9 years, 7 months ago) by gpertea
File length: 25134 byte(s)
Diff to previous 85
fixed a few more subtle bugs

Revision 85 - (view) (annotate) - [select for diffs]
Modified Fri Sep 30 20:38:13 2011 UTC (9 years, 7 months ago) by gpertea
File length: 25052 byte(s)
Diff to previous 84
rewrote, set params X=8, M=2, N=3

Revision 84 - (view) (annotate) - [select for diffs]
Modified Fri Sep 30 03:19:32 2011 UTC (9 years, 7 months ago) by gpertea
File length: 14362 byte(s)
Diff to previous 82
wip bad

Revision 82 - (view) (annotate) - [select for diffs]
Modified Thu Sep 29 20:46:39 2011 UTC (9 years, 7 months ago) by gpertea
File length: 14258 byte(s)
Diff to previous 81
wip

Revision 81 - (view) (annotate) - [select for diffs]
Modified Thu Sep 29 19:02:24 2011 UTC (9 years, 7 months ago) by gpertea
File length: 14347 byte(s)
Diff to previous 79
fixes, still a bug with flast_d[d] = flast_d[d] - flower + 2;

Revision 79 - (view) (annotate) - [select for diffs]
Modified Wed Sep 28 19:54:42 2011 UTC (9 years, 7 months ago) by gpertea
File length: 14033 byte(s)
Diff to previous 78
wip, fixed memory leaks

Revision 78 - (view) (annotate) - [select for diffs]
Modified Wed Sep 28 03:20:10 2011 UTC (9 years, 7 months ago) by gpertea
File length: 13996 byte(s)
Diff to previous 77
3' match seems to work, needs a few refinements

Revision 77 - (view) (annotate) - [select for diffs]
Modified Tue Sep 27 21:07:59 2011 UTC (9 years, 7 months ago) by gpertea
File length: 13667 byte(s)
Diff to previous 75
wip - cutting seeds, finalize()

Revision 75 - (view) (annotate) - [select for diffs]
Modified Tue Sep 27 02:24:57 2011 UTC (9 years, 7 months ago) by gpertea
File length: 16068 byte(s)
Diff to previous 74
implementing GreedyAlign for best rseeds etc.

Revision 74 - (view) (annotate) - [select for diffs]
Added Tue Sep 27 01:22:37 2011 UTC (9 years, 7 months ago) by gpertea
File length: 15106 byte(s)
added seqalign files

This form allows you to request diffs between any two revisions of this file. For each of the two "sides" of the diff, enter a numeric revision.

  Diffs between and
  Type of Diff should be a