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Revision 89 - (view) (annotate) - [select for diffs]
Modified Mon Oct 3 18:42:24 2011 UTC (9 years, 7 months ago) by gpertea
File length: 18668 byte(s)
Diff to previous 86
separate wrappers for 5' and  3' alignments

Revision 86 - (view) (annotate) - [selected]
Modified Fri Sep 30 21:38:39 2011 UTC (9 years, 7 months ago) by gpertea
File length: 18013 byte(s)
Diff to previous 85
fixed a few more subtle bugs

Revision 85 - (view) (annotate) - [select for diffs]
Modified Fri Sep 30 20:38:13 2011 UTC (9 years, 7 months ago) by gpertea
File length: 18015 byte(s)
Diff to previous 84 , to selected 86
rewrote, set params X=8, M=2, N=3

Revision 84 - (view) (annotate) - [select for diffs]
Modified Fri Sep 30 03:19:32 2011 UTC (9 years, 7 months ago) by gpertea
File length: 15675 byte(s)
Diff to previous 83 , to selected 86
wip bad

Revision 83 - (view) (annotate) - [select for diffs]
Modified Thu Sep 29 21:32:42 2011 UTC (9 years, 7 months ago) by gpertea
File length: 15664 byte(s)
Diff to previous 82 , to selected 86
wip

Revision 82 - (view) (annotate) - [select for diffs]
Modified Thu Sep 29 20:46:39 2011 UTC (9 years, 7 months ago) by gpertea
File length: 15566 byte(s)
Diff to previous 81 , to selected 86
wip

Revision 81 - (view) (annotate) - [select for diffs]
Modified Thu Sep 29 19:02:24 2011 UTC (9 years, 7 months ago) by gpertea
File length: 15456 byte(s)
Diff to previous 79 , to selected 86
fixes, still a bug with flast_d[d] = flast_d[d] - flower + 2;

Revision 79 - (view) (annotate) - [select for diffs]
Modified Wed Sep 28 19:54:42 2011 UTC (9 years, 7 months ago) by gpertea
File length: 15218 byte(s)
Diff to previous 78 , to selected 86
wip, fixed memory leaks

Revision 78 - (view) (annotate) - [select for diffs]
Modified Wed Sep 28 03:20:10 2011 UTC (9 years, 7 months ago) by gpertea
File length: 15310 byte(s)
Diff to previous 77 , to selected 86
3' match seems to work, needs a few refinements

Revision 77 - (view) (annotate) - [select for diffs]
Modified Tue Sep 27 21:07:59 2011 UTC (9 years, 7 months ago) by gpertea
File length: 15760 byte(s)
Diff to previous 74 , to selected 86
wip - cutting seeds, finalize()

Revision 74 - (view) (annotate) - [select for diffs]
Added Tue Sep 27 01:22:37 2011 UTC (9 years, 7 months ago) by gpertea
File length: 11518 byte(s)
Diff to selected 86
added seqalign files

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