ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/gclib/seqalign/GXAlign.h
(Generate patch)
# Line 592 | Line 592
592   // reward MUST be >1, always
593   GXAlnInfo* GreedyAlignRegion(const char* q_seq, int q_alnstart, int q_max,
594                    const char* s_seq, int s_alnstart, int s_max,
595 <                     bool editscript=false, int reward=2, int penalty=2, int xdrop=14);
595 >                     bool editscript=false, int reward=2, int penalty=3, int xdrop=8);
596   GXAlnInfo* GreedyAlign(const char* q_seq,  int q_alnstart, const char* s_seq, int s_alnstart,
597 <        bool editscript=false, int reward=2, int penalty=2, int xdrop=14);
597 >        bool editscript=false, int reward=2, int penalty=3, int xdrop=8);
598  
599   #endif

Diff Legend

Removed lines
+ Added lines
< Changed lines
> Changed lines