ViewVC Help
View File | Revision Log | Show Annotations | View Changeset | Root Listing
root/gclib/seqalign/itest.2line
Revision: 75
Committed: Tue Sep 27 02:24:57 2011 UTC (9 years, 11 months ago) by gpertea
File size: 423 byte(s)
Log Message:
implementing GreedyAlign for best rseeds etc.

Line User Rev File contents
1 gpertea 75 # simple test:
2     ACTGC-GTCAGTATGACACTGATGCTGATGCTGTAGCTGTGC
3     CACTCGAACCGACTCGACTG-CTANC
4    
5    
6     # simple test:
7     ACTGC-CTGACTATGACACTGATGCTGATGCTGTAGCTGTGC
8     CACTCGAACCGACTGCACTG-CTANC
9    
10 gpertea 74 #ctest
11     CGGGTACTCGACTG-CTGTAGCATGCNGTAGTG
12     GGCGACAGCCT-TAGCATG-AGTAGACATACATA
13     # current test:
14     GTACTCT-CTGAC-GAATCGTGTNGGGC
15     CGGGTACTCGACTG-CTGAATCNTGCAG
16    
17     # simple test:
18 gpertea 75 ACTCT-CTGACTATGACA
19     CATAACCGACTCGACTG-CTANC