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root/gclib/seqalign/itest.2line
Revision: 87
Committed: Sun Oct 2 19:12:03 2011 UTC (9 years, 7 months ago) by gpertea
File size: 1127 byte(s)
Log Message:
disable pointer arithmetic in GXGreedyExtend(), it's bad

Line User Rev File contents
1 gpertea 87 # current test:
2     GTACTCT-CTGAC-GAATCGTGCAGGGC
3     ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCGGGTACTCGACTG-CTGAATCNTGC
4 gpertea 81
5 gpertea 84 #ctest
6     GGCGACAGCCT-TAGCATG-AGTAGACATACATA
7     CGGGTACTCGACTG-CTGTAGCATGCNGTAGTG
8 gpertea 81
9     # simple test:
10 gpertea 78 ACTGC-CTGAACTATGACACTGATGCTGATG
11     CACTCGAACCGACTGCACTGA-CTATGA
12 gpertea 75
13 gpertea 74 #ctest
14 gpertea 84 GGCGACAGCCT-TAGCATG-AGTAGACATACATA
15 gpertea 74 CGGGTACTCGACTG-CTGTAGCATGCNGTAGTG
16    
17 gpertea 87 # simple test:
18     TATGATGAACTATGACACTGATGCTGATG
19     ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCCTGCACTCGAACCGACTGCACTGAGCTATGNTG
20 gpertea 84
21 gpertea 87 # v test:
22     ATCGTAGCTGTGCTAGTGCTGTGACCATAACCGACTCGACTGCTA
23     ATCGTAGCTGTG-TAGTGCTGTGACCATANCCGACTCGACTGCTA
24 gpertea 74
25 gpertea 87 # v test:
26     ACTGCTAGACTATGACA
27     ATCGTAGCTGTGCTAGTGCTGTGACCATAACCGACTCGACTGCTA
28 gpertea 74
29 gpertea 87 # simple gap test:
30     ACTCT-CTGACTATGACA
31     CATAACCGACTCGACTG-CTANC