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root/gclib/seqalign/itest.2line
Revision: 89
Committed: Mon Oct 3 18:42:24 2011 UTC (9 years, 7 months ago) by gpertea
File size: 1710 byte(s)
Log Message:
separate wrappers for 5' and  3' alignments

Line User Rev File contents
1 gpertea 89 # simple gap test:
2     ACTCT-CTGACTATGACA
3     CATAACCGACTCGACTG-CTANC
4 gpertea 81
5 gpertea 89 # v test 2:
6     ACTGCTAGACTATGACA
7     ATCGTAGCTGTGCTAGTGCTGTGACCATAACCGACTCGACTGCTA
8    
9     # v test:
10     ATCGTAGCTGTGCTAGTGCTGTGACCATAACCGACTCGACTGCTACTGTGACGTGCTGATGCTGCTGTCGTGATGC
11     ATCGTAGCTGTG-TAGTGCTGTGACCATANCCGACTCGACTGCTA
12    
13     # simple test:
14     TATGATGAACTATGACACTGATGCTGATG
15     ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCCTGCACTCGAACCGACTGCACTGAGCTATGNTG
16    
17 gpertea 84 #ctest
18     GGCGACAGCCT-TAGCATG-AGTAGACATACATA
19     CGGGTACTCGACTG-CTGTAGCATGCNGTAGTG
20 gpertea 81
21     # simple test:
22 gpertea 78 ACTGC-CTGAACTATGACACTGATGCTGATG
23     CACTCGAACCGACTGCACTGA-CTATGA
24 gpertea 75
25 gpertea 89 #ctest 2
26 gpertea 84 GGCGACAGCCT-TAGCATG-AGTAGACATACATA
27 gpertea 74 CGGGTACTCGACTG-CTGTAGCATGCNGTAGTG
28    
29 gpertea 89 # c test:
30     GTANTCT-CTGACTGAATCGTGCAGGGC
31     ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCGGGTACTCTACTGACT-AATCNTGC
32 gpertea 84
33 gpertea 89 # current test:
34     GTACTCT-CTGAC-GAATCGTGCAGGGC
35     ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCGGGTACTCGACTG-CTGAATCNTGC
36 gpertea 74
37 gpertea 89 # current test 2:
38     GTACTCT-CTGAC-GAATCGTGCAGGGC
39     ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCGGGTACTCGACTG-CTGAATCNTGC