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root/gclib/seqalign/itest.2line
Revision: 87
Committed: Sun Oct 2 19:12:03 2011 UTC (9 years, 7 months ago) by gpertea
File size: 1127 byte(s)
Log Message:
disable pointer arithmetic in GXGreedyExtend(), it's bad

Line File contents
1 # current test:
2 GTACTCT-CTGAC-GAATCGTGCAGGGC
3 ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCGGGTACTCGACTG-CTGAATCNTGC
4
5 #ctest
6 GGCGACAGCCT-TAGCATG-AGTAGACATACATA
7 CGGGTACTCGACTG-CTGTAGCATGCNGTAGTG
8
9 # simple test:
10 ACTGC-CTGAACTATGACACTGATGCTGATG
11 CACTCGAACCGACTGCACTGA-CTATGA
12
13 #ctest
14 GGCGACAGCCT-TAGCATG-AGTAGACATACATA
15 CGGGTACTCGACTG-CTGTAGCATGCNGTAGTG
16
17 # simple test:
18 TATGATGAACTATGACACTGATGCTGATG
19 ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCCTGCACTCGAACCGACTGCACTGAGCTATGNTG
20
21 # v test:
22 ATCGTAGCTGTGCTAGTGCTGTGACCATAACCGACTCGACTGCTA
23 ATCGTAGCTGTG-TAGTGCTGTGACCATANCCGACTCGACTGCTA
24
25 # v test:
26 ACTGCTAGACTATGACA
27 ATCGTAGCTGTGCTAGTGCTGTGACCATAACCGACTCGACTGCTA
28
29 # simple gap test:
30 ACTCT-CTGACTATGACA
31 CATAACCGACTCGACTG-CTANC