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root/gclib/seqalign/itest.2line
Revision: 89
Committed: Mon Oct 3 18:42:24 2011 UTC (9 years, 9 months ago) by gpertea
File size: 1710 byte(s)
Log Message:
separate wrappers for 5' and  3' alignments

Line File contents
1 # simple gap test:
2 ACTCT-CTGACTATGACA
3 CATAACCGACTCGACTG-CTANC
4
5 # v test 2:
6 ACTGCTAGACTATGACA
7 ATCGTAGCTGTGCTAGTGCTGTGACCATAACCGACTCGACTGCTA
8
9 # v test:
10 ATCGTAGCTGTGCTAGTGCTGTGACCATAACCGACTCGACTGCTACTGTGACGTGCTGATGCTGCTGTCGTGATGC
11 ATCGTAGCTGTG-TAGTGCTGTGACCATANCCGACTCGACTGCTA
12
13 # simple test:
14 TATGATGAACTATGACACTGATGCTGATG
15 ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCCTGCACTCGAACCGACTGCACTGAGCTATGNTG
16
17 #ctest
18 GGCGACAGCCT-TAGCATG-AGTAGACATACATA
19 CGGGTACTCGACTG-CTGTAGCATGCNGTAGTG
20
21 # simple test:
22 ACTGC-CTGAACTATGACACTGATGCTGATG
23 CACTCGAACCGACTGCACTGA-CTATGA
24
25 #ctest 2
26 GGCGACAGCCT-TAGCATG-AGTAGACATACATA
27 CGGGTACTCGACTG-CTGTAGCATGCNGTAGTG
28
29 # c test:
30 GTANTCT-CTGACTGAATCGTGCAGGGC
31 ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCGGGTACTCTACTGACT-AATCNTGC
32
33 # current test:
34 GTACTCT-CTGAC-GAATCGTGCAGGGC
35 ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCGGGTACTCGACTG-CTGAATCNTGC
36
37 # current test 2:
38 GTACTCT-CTGAC-GAATCGTGCAGGGC
39 ACTCGTGATCGTGATCGTGACTGCTGTAGCTGCTAGTGCTGATCGTGCTAGTCGTAGTCGTGTGTAGCTGACTGACTGACTGTAGTGCGCTAGTGCTAGCCGGGTACTCGACTG-CTGAATCNTGC