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root/gclib/tophat_cpp
r310
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SeqAn-1.3/ 209 (10 years ago) by gpertea:
wiggles.h 29 (11 years ago) by gpertea: adding tophat source work
wiggles.cpp 29 (11 years ago) by gpertea: adding tophat source work
utils.h 158 (10 years ago) by gpertea:
utils.cpp 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
tophat_reports.cpp 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
tophat 263 (10 years ago) by gpertea: resuming works
tokenize.h 29 (11 years ago) by gpertea: adding tophat source work
tokenize.cpp 29 (11 years ago) by gpertea: adding tophat source work
timer.h 29 (11 years ago) by gpertea: adding tophat source work
sra_to_solid.py 29 (11 years ago) by gpertea: adding tophat source work
segments.h 29 (11 years ago) by gpertea: adding tophat source work
segment_juncs.cpp 259 (10 years ago) by gpertea: updated to v2.0.4
sam_juncs.cpp 135 (10 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
sam2bam.cpp 29 (11 years ago) by gpertea: adding tophat source work
reads.h 257 (10 years ago) by gpertea: update
reads.cpp 237 (10 years ago) by gpertea: wip
qual.h 29 (11 years ago) by gpertea: adding tophat source work
qual.cpp 29 (11 years ago) by gpertea: adding tophat source work
prep_reads.cpp 259 (10 years ago) by gpertea: updated to v2.0.4
mask_sam.cpp 245 (10 years ago) by gpertea: merge-sync attempt
map2gtf.h 259 (10 years ago) by gpertea: updated to v2.0.4
map2gtf.cpp 259 (10 years ago) by gpertea: updated to v2.0.4
long_spanning_reads.cpp 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
library_stats.cpp 29 (11 years ago) by gpertea: adding tophat source work
junctions.h 254 (10 years ago) by gpertea: fix_map_ordering wip to throw away not "acceptable" mappings
junctions.cpp 200 (10 years ago) by gpertea:
juncs_db.cpp 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
inserts.h 245 (10 years ago) by gpertea: merge-sync attempt
inserts.cpp 245 (10 years ago) by gpertea: merge-sync attempt
insertions.h 236 (10 years ago) by gpertea: sync, wip prep_reads
insertions.cpp 246 (10 years ago) by gpertea: wip, -M option still broken!
gtf_juncs.cpp 254 (10 years ago) by gpertea: fix_map_ordering wip to throw away not "acceptable" mappings
gff.h 239 (10 years ago) by gpertea: wip prep_reads.cpp, tophat
gff.cpp 254 (10 years ago) by gpertea: fix_map_ordering wip to throw away not "acceptable" mappings
gdna.h 228 (10 years ago) by gpertea: wip - prefiltering fix
gdna.cpp 228 (10 years ago) by gpertea: wip - prefiltering fix
fusions.h 245 (10 years ago) by gpertea: merge-sync attempt
fusions.cpp 245 (10 years ago) by gpertea: merge-sync attempt
fragments.h 200 (10 years ago) by gpertea:
fragments.cpp 200 (10 years ago) by gpertea:
fix_map_ordering.cpp 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
extract_reads.cpp 135 (10 years ago) by gpertea: wip - SplicedSAMHitFactory() still not implemented
deletions.h 236 (10 years ago) by gpertea: sync, wip prep_reads
deletions.cpp 245 (10 years ago) by gpertea: merge-sync attempt
coverage.h 261 (10 years ago) by gpertea:
coverage.cpp 261 (10 years ago) by gpertea:
contig_to_chr_coords.py 29 (11 years ago) by gpertea: adding tophat source work
config.h 200 (10 years ago) by gpertea:
common.h 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
common.cpp 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
codons.h 29 (11 years ago) by gpertea: adding tophat source work
codons.cpp 29 (11 years ago) by gpertea: adding tophat source work
closures.h 245 (10 years ago) by gpertea: merge-sync attempt
closures.cpp 245 (10 years ago) by gpertea: merge-sync attempt
bwt_map.h 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
bwt_map.cpp 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
bwt2sam.cpp 29 (11 years ago) by gpertea: adding tophat source work
bed_to_juncs.py 29 (11 years ago) by gpertea: adding tophat source work
bam_merge_impl.cpp 261 (10 years ago) by gpertea:
bam_merge.h 261 (10 years ago) by gpertea:
bam_merge.cpp 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
bam_dump.cpp 29 (11 years ago) by gpertea: adding tophat source work
bam2fastx.cpp 260 (10 years ago) by gpertea: wip tophat.py - adding resume feature
assert_helpers.h 29 (11 years ago) by gpertea: adding tophat source work
alphabet.h 29 (11 years ago) by gpertea: adding tophat source work
align_status.h 200 (10 years ago) by gpertea:
align_status.cpp 257 (10 years ago) by gpertea: update
Makefile 263 (10 years ago) by gpertea: resuming works
GTFToFasta.h 165 (10 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
GTFToFasta.cpp 165 (10 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
GStr.h 228 (10 years ago) by gpertea: wip - prefiltering fix
GStr.cpp 228 (10 years ago) by gpertea: wip - prefiltering fix
GList.hh 228 (10 years ago) by gpertea: wip - prefiltering fix
GHash.hh 228 (10 years ago) by gpertea: wip - prefiltering fix
GFastaIndex.h 29 (11 years ago) by gpertea: adding tophat source work
GFastaIndex.cpp 29 (11 years ago) by gpertea: adding tophat source work
GFaSeqGet.h 228 (10 years ago) by gpertea: wip - prefiltering fix
GFaSeqGet.cpp 228 (10 years ago) by gpertea: wip - prefiltering fix
GBase.h 228 (10 years ago) by gpertea: wip - prefiltering fix
GBase.cpp 228 (10 years ago) by gpertea: wip - prefiltering fix
GArgs.h 256 (10 years ago) by gpertea: sync with Daehwan's fixes
GArgs.cpp 256 (10 years ago) by gpertea: sync with Daehwan's fixes
FastaTools.h 165 (10 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
FastaTools.cpp 165 (10 years ago) by gpertea: sync back with Daehwan. Test bam_merge for memory leaks!
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