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trunk/ 371 (14 years ago) by lpetzo: Class ContactMap: - Exception ContactMapConstructionError is thrown if the construction of a contact map from a Graph object fails. - changed method to determine the number of nodes of a graph object. - changed method to iterate through the set of edges of the graph (though the previous version seemed to be much more efficient ...) Class SADP: - added some new members controlling to input order of the contact maps (preservedInputOrder) - the progress status of the run() method is send to a Retriever object - added getters and setter for all data member. - implemented methods to compute the sequence alignment and the node matching - a couple of changes in method main
tags/ 364 (14 years ago) by stehr: tagging version 0.8.5 in sync with CMView-0.8.5
branches/ 1 (16 years ago) by filippis: Initial import of tools
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