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aglappe-jung/ 427 (14 years ago) by duarte: Fixed bug in PairwiseAlignmentGraphConverter: was not adding the nodes for gaps, also some other minor bugs fixed in copying of objects Fixed bug in getAllCommonNbhSizes, 1) now returning a HashMap on Pair<Integer>, not Pair<RIGNode> 2) was filling cells when size=0 Added method getIncidentNodes to IntPairSet as a temporary fix
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