 ../
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SADP.java
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426
(13 years ago)
by duarte:
Now PairWiseAlignmentConverter and PairwiseAlignmentGraphConverter work in the new JUNG framework.
New class IntPairComparator
Now sorting output in RIGraph.write_graph_to_file
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IOUtil.java
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419
(13 years ago)
by duarte:
Re-branching for JUNG2 development
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ContactMapConstructorError.java
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419
(13 years ago)
by duarte:
Re-branching for JUNG2 development
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ContactMap.java
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420
(13 years ago)
by duarte:
First implementation of the new graph framework using JUNG2. Still a few classes to fix, but all basic functionality is there.
NOTE: at the moment ProtStructGraph is a SparseGraph which doesn't guarantee that the graph has no parallel or loop edges (I thought that would be solved by using the SimpleGraph interface but it doesn't, that's only a marker interface)
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