modelit/server/results.php

<?php
include_once("inc/settings.php");

function get_output_url($job_name) {
        return "results/".$job_name."/";
}

function get_seq_file($job_name) {
        return get_result_file($job_name, ".fa");
}

function view_ts_result_url($job) {
        return "select_templates.php?job_name=$job";
}

function view_sm_result_url($job) {
        return "show_modeling_result.php?job_name=$job";
}

function get_yes_img_url() {
        return "images/tick.png";
}

function get_no_img_url() {
        return "images/cross.png";      
}

function get_running_img_url() {
        return "images/anidot.gif";     
}

function get_run_stat_img_url() {
        return "images/stadot.gif";     
}

function get_ts_job_name($job_name) {
        return 'TS-'.$job_name;
}

function is_ts_job_running($job_name) {
        global $server_user;
        $u = escapeshellcmd($server_user);
        $j = escapeshellcmd(get_ts_job_name($job_name));
        $cmd = 'qstat -u '.$u.' -xml | grep "<JB_name>'.$j.'</JB_name>"';
        $result = exec($cmd);
        if (strpos($result, $j) !== false) {
                return true;
        } else {
                return false;
        }
}

function get_mb_job_name($job_name) {
        return 'MB-'.$job_name;
}

function is_mb_job_running($job_name) {
        global $server_user;
        $u = escapeshellcmd($server_user);
        $j = escapeshellcmd(get_mb_job_name($job_name));
        $cmd = 'qstat -u '.$u.' -xml | grep "<JB_name>'.$j.'</JB_name>"';
        $result = exec($cmd);
        if (strpos($result, $j) !== false) {
                return true;
        } else {
                return false;
        }
}

# this file should exist if modeling was started
function get_template_file($job_name) {
        return get_result_file($job_name, ".man.templates");
}

# this file should exist if template searching was completed
function get_report_file($job_name) {
        return get_result_file($job_name,".report");    
}

# this file should exist if modelling was completed
function get_pdb_file($job_name) {
        return get_result_file($job_name, ".reconstructed.pdb");
}

# return all job names (= subdirs in results dir) in order of creation date (taken from the fasta file)
function get_all_job_names() {
        $results = array();
        $handler = opendir(get_results_dir());
        while ($file = readdir($handler)) {
        if ($file != '.' && $file != '..' && is_dir(get_output_dir($file))) {
                $seqfile = get_seq_file($file);
                if(file_exists($seqfile)) {
                        $last_modified = filemtime($seqfile);
                } else {
                        $last_modified = 0; 
                }
                $results[$file] = $last_modified;
        }
    }
    closedir($handler);
    arsort($results);
    return $results;    
}

# auto-refresh
header('Refresh: '.$refresh_rate);
?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
  <title>Structure prediction server</title>
  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
  <link rel="stylesheet" type="text/css" href="css/default.css" />
</head>
<body>
<?php include_once("inc/owl_header.inc.php") ?>
<div class="main-content">
<h3>Results overview</h3>
<?php 
        echo '<div class="buttons">';
        echo '<a href="index.php"><img src="images/new.png" alt="" /> Start new job</a>' ;
        echo '</div>';
        echo '<div style="clear:both;"></div>';
        echo '<br/>';

        $jobs = get_all_job_names();
        if(count($jobs) < 1) {
                echo 'No results found!';
        } else {
                echo '<table>';
                echo '<tr>';
        echo '<th>Jobname</th>';
        echo '<th>Submission date</th>';
        echo '<th>Raw output</th>';
        echo '<th>Template selection</th>';
        echo '<th>Modeling result</th>';                
        echo '</tr>';
                foreach($jobs as $job => $last_modified) {
                        echo '<tr>';
            
            # job name          
                        #echo '<a href=".get_results_url($job).">'.$job.'</a>';
                        echo '<td>'.$job.'</td>';
                        
                        # date
                        #$last_modified = filemtime(get_output_dir($job));
                        if($last_modified == 0) {
                                echo '<td>?</td>';      
                        } else {
                                echo '<td>'.date("l, dS F, Y @ h:ia", $last_modified).'</td>';                          
                        }

                        
                        # raw output
                        echo '<td style="text-align:center;"><a href="'.get_output_url($job).'"><img src="images/eye.png" border="0" title="view" alt="view" /></a></td>';
                        
                        # template selection result
                        echo '<td style="text-align:center;">';
                        if(is_ts_job_running($job)) {
                                echo '<img border="0" src="'.get_running_img_url().'">';
                        } else {
                                if(!file_exists(get_report_file($job))) {
                                        echo '<img border="0" src="'.get_no_img_url().'">';
                                } else {
                                        echo '<a href="'.view_ts_result_url($job).'"><img border="0" src="'.get_yes_img_url().'"></a>';
                                }                                       
                        }
                        echo '</td>';
                        
                        # modelling result
                        echo '<td style="text-align:center;">';
                        if(!file_exists(get_template_file($job))) {
                                echo '-';
                        } else {
                                if(is_mb_job_running($job)) {
                                        echo '<img border="0" src="'.get_running_img_url().'">';
                                } else {
                                        if(!file_exists(get_pdb_file($job))) {
                                                echo '<img border="0" src="'.get_no_img_url().'">';
                                        } else {
                                                echo '<a href="'.view_sm_result_url($job).'"><img border="0" src="'.get_yes_img_url().'"></a>';
                                        }
                                }                                       
                        }               
                        echo '</td>';
                        echo '</tr>';
                }
                echo '</table>';
                
                echo '<h4>Legend:</h4>';
                echo '<img src="'.get_run_stat_img_url().'"> Job still running<br/>';
                echo '<img src="'.get_yes_img_url().'"> Job completed. Click to see results.<br/>';
                echo '<img src="'.get_no_img_url().'"> No results found. Job probably failed.<br/>';
                echo '<br/>';
                echo 'This page automatically refreshes every '.$refresh_rate.' seconds.';
        }
        
?>
</div>
</body>
</html>
Revision:	1299
Committed:	Tue Jan 11 17:38:33 2011 UTC (11 years, 4 months ago) by hstehr
Original Path:	*trunk/modelit/server/results.php*
File size:	5493 byte(s)
Log Message:	adding Model-It server files to repository
Line	File contents
1	<?php
2	include_once("inc/settings.php");
3
4	function get_output_url($job_name) {
5	return "results/".$job_name."/";
6	}
7
8	function get_seq_file($job_name) {
9	return get_result_file($job_name, ".fa");
10	}
11
12	function view_ts_result_url($job) {
13	return "select_templates.php?job_name=$job";
14	}
15
16	function view_sm_result_url($job) {
17	return "show_modeling_result.php?job_name=$job";
18	}
19
20	function get_yes_img_url() {
21	return "images/tick.png";
22	}
23
24	function get_no_img_url() {
25	return "images/cross.png";
26	}
27
28	function get_running_img_url() {
29	return "images/anidot.gif";
30	}
31
32	function get_run_stat_img_url() {
33	return "images/stadot.gif";
34	}
35
36	function get_ts_job_name($job_name) {
37	return 'TS-'.$job_name;
38	}
39
40	function is_ts_job_running($job_name) {
41	global $server_user;
42	$u = escapeshellcmd($server_user);
43	$j = escapeshellcmd(get_ts_job_name($job_name));
44	$cmd = 'qstat -u '.$u.' -xml \| grep "<JB_name>'.$j.'</JB_name>"';
45	$result = exec($cmd);
46	if (strpos($result, $j) !== false) {
47	return true;
48	} else {
49	return false;
50	}
51	}
52
53	function get_mb_job_name($job_name) {
54	return 'MB-'.$job_name;
55	}
56
57	function is_mb_job_running($job_name) {
58	global $server_user;
59	$u = escapeshellcmd($server_user);
60	$j = escapeshellcmd(get_mb_job_name($job_name));
61	$cmd = 'qstat -u '.$u.' -xml \| grep "<JB_name>'.$j.'</JB_name>"';
62	$result = exec($cmd);
63	if (strpos($result, $j) !== false) {
64	return true;
65	} else {
66	return false;
67	}
68	}
69
70	# this file should exist if modeling was started
71	function get_template_file($job_name) {
72	return get_result_file($job_name, ".man.templates");
73	}
74
75	# this file should exist if template searching was completed
76	function get_report_file($job_name) {
77	return get_result_file($job_name,".report");
78	}
79
80	# this file should exist if modelling was completed
81	function get_pdb_file($job_name) {
82	return get_result_file($job_name, ".reconstructed.pdb");
83	}
84
85	# return all job names (= subdirs in results dir) in order of creation date (taken from the fasta file)
86	function get_all_job_names() {
87	$results = array();
88	$handler = opendir(get_results_dir());
89	while ($file = readdir($handler)) {
90	if ($file != '.' && $file != '..' && is_dir(get_output_dir($file))) {
91	$seqfile = get_seq_file($file);
92	if(file_exists($seqfile)) {
93	$last_modified = filemtime($seqfile);
94	} else {
95	$last_modified = 0;
96	}
97	$results[$file] = $last_modified;
98	}
99	}
100	closedir($handler);
101	arsort($results);
102	return $results;
103	}
104
105	# auto-refresh
106	header('Refresh: '.$refresh_rate);
107	?>
108	<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
109	<html xmlns="http://www.w3.org/1999/xhtml">
110	<head>
111	<title>Structure prediction server</title>
112	<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
113	<link rel="stylesheet" type="text/css" href="css/default.css" />
114	</head>
115	<body>
116	<?php include_once("inc/owl_header.inc.php") ?>
117	<div class="main-content">
118	<h3>Results overview</h3>
119	<?php
120	echo '<div class="buttons">';
121	echo '<a href="index.php"><img src="images/new.png" alt="" /> Start new job</a>' ;
122	echo '</div>';
123	echo '<div style="clear:both;"></div>';
124	echo '<br/>';
125
126	$jobs = get_all_job_names();
127	if(count($jobs) < 1) {
128	echo 'No results found!';
129	} else {
130	echo '<table>';
131	echo '<tr>';
132	echo '<th>Jobname</th>';
133	echo '<th>Submission date</th>';
134	echo '<th>Raw output</th>';
135	echo '<th>Template selection</th>';
136	echo '<th>Modeling result</th>';
137	echo '</tr>';
138	foreach($jobs as $job => $last_modified) {
139	echo '<tr>';
140
141	# job name
142	#echo '<a href=".get_results_url($job).">'.$job.'</a>';
143	echo '<td>'.$job.'</td>';
144
145	# date
146	#$last_modified = filemtime(get_output_dir($job));
147	if($last_modified == 0) {
148	echo '<td>?</td>';
149	} else {
150	echo '<td>'.date("l, dS F, Y @ h:ia", $last_modified).'</td>';
151	}
152
153
154	# raw output
155	echo '<td style="text-align:center;"><a href="'.get_output_url($job).'"><img src="images/eye.png" border="0" title="view" alt="view" /></a></td>';
156
157	# template selection result
158	echo '<td style="text-align:center;">';
159	if(is_ts_job_running($job)) {
160	echo '<img border="0" src="'.get_running_img_url().'">';
161	} else {
162	if(!file_exists(get_report_file($job))) {
163	echo '<img border="0" src="'.get_no_img_url().'">';
164	} else {
165	echo '<a href="'.view_ts_result_url($job).'"><img border="0" src="'.get_yes_img_url().'"></a>';
166	}
167	}
168	echo '</td>';
169
170	# modelling result
171	echo '<td style="text-align:center;">';
172	if(!file_exists(get_template_file($job))) {
173	echo '-';
174	} else {
175	if(is_mb_job_running($job)) {
176	echo '<img border="0" src="'.get_running_img_url().'">';
177	} else {
178	if(!file_exists(get_pdb_file($job))) {
179	echo '<img border="0" src="'.get_no_img_url().'">';
180	} else {
181	echo '<a href="'.view_sm_result_url($job).'"><img border="0" src="'.get_yes_img_url().'"></a>';
182	}
183	}
184	}
185	echo '</td>';
186	echo '</tr>';
187	}
188	echo '</table>';
189
190	echo '<h4>Legend:</h4>';
191	echo '<img src="'.get_run_stat_img_url().'"> Job still running<br/>';
192	echo '<img src="'.get_yes_img_url().'"> Job completed. Click to see results.<br/>';
193	echo '<img src="'.get_no_img_url().'"> No results found. Job probably failed.<br/>';
194	echo '<br/>';
195	echo 'This page automatically refreshes every '.$refresh_rate.' seconds.';
196	}
197
198	?>
199	</div>
200	</body>
201	</html>