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hstehr |
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<?php |
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include_once("inc/settings.php"); |
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if(!isset($_GET['job_name'])) { |
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error('No job name specified.'); |
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} else { |
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$job_name = $_GET['job_name']; |
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} |
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function get_result_dir($job_name) { |
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$j = escapeshellcmd($job_name); |
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return $GLOBALS['server_root']."results/".$j."/"; |
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} |
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function get_template_file($job_name) { |
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return get_result_file($job_name, ".man.templates"); |
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} |
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function get_seq_file($job_name) { |
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return get_result_file($job_name, ".fa"); |
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} |
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function get_mb_job_name($job_name) { |
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return 'MB-'.$job_name; |
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} |
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function run_modeling($job_name) { |
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global $use_parallel_tinker; |
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write_mb_lock_file($job_name); |
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$t_file = get_template_file($job_name); |
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$s_file = get_seq_file($job_name); |
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$o_dir = get_result_dir($job_name); |
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# old shell-script |
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#$cmd = sprintf("qsub -V -q all.q -N %s -o %s -e %s /project/StruPPi/CASP8/scripts/runall.sh -i %s -o %s -t %s",get_mb_job_name($job_name), $o_dir, $o_dir, $s_file, $o_dir, $t_file); |
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if($use_parallel_tinker) { |
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# brand new parallel tinker java code |
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$cmd = sprintf("qsub -V -q all.q -N %s -o %s -e %s /project/StruPPi/CASP8/scripts/model_it -A -i %s -o %s -t %s",get_mb_job_name($job_name), $o_dir, $o_dir, $s_file, $o_dir, $t_file); |
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} else { |
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# standard java code |
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$cmd = sprintf("qsub -V -q all.q -N %s -o %s -e %s /project/StruPPi/CASP8/scripts/model_it -i %s -o %s -t %s",get_mb_job_name($job_name), $o_dir, $o_dir, $s_file, $o_dir, $t_file); |
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} |
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$retval = 0; |
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system($cmd,$retval); |
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#echo($cmd); |
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echo '<p></p>'; |
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return $retval; |
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} |
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function get_mb_lock_file($job_name) { |
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return get_result_file($job_name, ".MB.lock"); |
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} |
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// writes a lock file indicating that modeling was started so that it won't be resubmitted when the browser's |
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// 'back' button is used. The creation time of the file indicates when the job was started. The finishing time |
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// can be taken from the creation time of the pdb file. |
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function write_mb_lock_file($job_name) { |
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touch(get_mb_lock_file($job_name)); |
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} |
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# make sure that template file exists, otherwise can't model |
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if(!file_exists(get_template_file($job_name))) { |
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error('Template file for job'.$job_name.' not found.'); |
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} |
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?> |
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> |
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<html xmlns="http://www.w3.org/1999/xhtml"> |
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<head> |
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<title>Structure prediction server</title> |
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<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" /> |
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<link rel="stylesheet" type="text/css" href="css/default.css" /> |
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</head> |
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<body> |
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<?php include_once("inc/owl_header.inc.php") ?> |
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<h3>Run structure modelling</h3> |
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<?php |
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echo "<p><b>Job name:</b> ".$job_name."</p>"; |
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echo '<p><b>Templates:</b><br/>'; |
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$templates = file(get_template_file($job_name)); |
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foreach($templates as $key => $val) { |
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echo $val."<br/>"; |
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} |
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echo '</p>'; |
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// create output dir |
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#echo "<p>Creating output directory...<br/>"; |
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#create_output_dir($job_name); |
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if(file_exists(get_mb_lock_file($job_name))) { |
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echo '<p>Job already submitted.</p>'; |
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} else { |
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// run templateSelection with output dir and sequence file |
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$result = run_modeling($job_name); |
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if( $result != 0) { |
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echo '<p><font color="red">An error occured </font>(exit status='.$result.'). See the <a href="'.get_error_log_url($job_name).'">error log</a>.</p>'; |
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} |
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} |
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?> |
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<div class="buttons"> |
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<a href="wait_for_modeling_result.php?job_name=<? echo $job_name; ?>"><img src="images/eye.png" alt="" /> Check results</a> |
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</div> |
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</body> |
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</html> |