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preparing for adding 'mutanom' package: adding dependencies to jars dir
Control database access! for CGAP
reverting changes to .project and .classpath which were accidentally committed
fixed a bug in GraphAverager.getGraphWithTopContacts() which caused a null pointer exception in jung.SparseGraph.addEdge(), this may even be a bug in jung
New UniprotConnection taken from Henning's structural impact project (lots of new jar dependencies with that). New EmblWSDBFetchConnection class to get sequences from EMBL web services.
Updated jung jars to version 2.0.1 (finally the release version, not alpha or beta!)
Reorganised the project with a src folder for java source files. Added a jars dir with all jars needed for the project. Added .project and .classpath pointing to relative path of jars. The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.
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