 ../
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jars/
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1597
(9 years ago)
by jmduarteg:
Several changes related to blast:
- now supporting blast+ blastp.
- blast xml parser can now ignore the DTD url, avoiding unnecessary network access if desired
- refactoring: legacy blast related stuff is now refactored to contain "legacy", runBlastp refers to blast+
Also updated uniprot jar.
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modelit/
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1301
(11 years ago)
by hstehr:
overwriting default contactTypes.dat with the one needed for CMView release versions (only contains standard contact types). The old version with all esoteric contact types is renamed to contactTypes.all.dat
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reconstruct/
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992
(12 years ago)
by jmduarteg:
Removed unneeded code
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scripts/
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1596
(9 years ago)
by jmduarteg:
Now using makeblastdb (for blast+) and also only getting by default uniref100
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src/
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1597
(9 years ago)
by jmduarteg:
Several changes related to blast:
- now supporting blast+ blastp.
- blast xml parser can now ignore the DTD url, avoiding unnecessary network access if desired
- refactoring: legacy blast related stuff is now refactored to contain "legacy", runBlastp refers to blast+
Also updated uniprot jar.
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.classpath
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1546
(10 years ago)
by jmduarteg:
Removing unused class and thus JRclient dependency
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.project
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1347
(11 years ago)
by hstehr:
moving project CCCP to this repository
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LICENSE
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974
(12 years ago)
by duarte:
Adding license files
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build.xml
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1548
(10 years ago)
by jmduarteg:
New target jar-core-only (now default) which will build the default and core packages only and pack all jars except for the uniprot.jar
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gpl.txt
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974
(12 years ago)
by duarte:
Adding license files
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