ViewVC Help
View Directory | Revision Log | Download Tarball | View Changeset | Root Listing
File Last Change
jars/ 1597 (9 years ago) by jmduarteg: Several changes related to blast: - now supporting blast+ blastp. - blast xml parser can now ignore the DTD url, avoiding unnecessary network access if desired - refactoring: legacy blast related stuff is now refactored to contain "legacy", runBlastp refers to blast+ Also updated uniprot jar.
modelit/ 1301 (11 years ago) by hstehr: overwriting default contactTypes.dat with the one needed for CMView release versions (only contains standard contact types). The old version with all esoteric contact types is renamed to contactTypes.all.dat
reconstruct/ 992 (12 years ago) by jmduarteg: Removed unneeded code
scripts/ 1596 (9 years ago) by jmduarteg: Now using makeblastdb (for blast+) and also only getting by default uniref100
src/ 1610 (9 years ago) by jmduarteg: Fixed bug: very strange PDB entries can have no atoms observed in a chain at all (e.g. 1oax) or all atoms of a chain in one alt location only (e.g. 3nji). We throw now exceptions for them as in my opinion they don't follow the data-modelling standards properly.
.classpath 1546 (10 years ago) by jmduarteg: Removing unused class and thus JRclient dependency
.project 1347 (11 years ago) by hstehr: moving project CCCP to this repository
LICENSE 974 (12 years ago) by duarte: Adding license files
build.xml 1548 (10 years ago) by jmduarteg: New target jar-core-only (now default) which will build the default and core packages only and pack all jars except for the uniprot.jar
gpl.txt 974 (12 years ago) by duarte: Adding license files
         5 files shown


Name Value
svn:ignore .classpath .project .settings build