 ../
|
actionTools/
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
proteinstructure/
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
sadp/
|
467
(14 years ago)
by lpetzo:
don't touch br!!!
|
|
tinker/
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
tools/
|
381
(14 years ago)
by lpetzo:
a generic pair class
|
Manifest.txt
|
439
(14 years ago)
by duarte:
Updated version in Manifest for tagging
|
|
benchmarkGraphAlgorithm.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
calculateGridDensity.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
cnCoarseNbhood.java
|
272
(14 years ago)
by lappe:
|
|
cnEvalTargetNbhood.java
|
271
(14 years ago)
by lappe:
|
|
cnHashIterNbhood.java
|
266
(14 years ago)
by lappe:
|
|
cnex1.java
|
265
(14 years ago)
by lappe:
final version
incl. pessimistic tie-break
|
|
compareCMs.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
createGraphDb.sh
|
413
(14 years ago)
by filippis:
createGraphDb.sh
-pchain_code is now modified to VARCHAR(2) from CHAR(1) due to pdbase_chain_code
-index for pdb_residue_info table added
|
|
genDbGraph.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
genGraph.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
hashIterNbhood.java
|
267
(14 years ago)
by lappe:
|
|
iterEvalNbhood.java
|
269
(14 years ago)
by lappe:
|
|
iterateNbhood.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateNbs.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateUpperNbhood.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateUpperNbs.java
|
268
(14 years ago)
by lappe:
|
|
listInfoGain.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
listInfoLoss.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
make-aglappe.sh
|
432
(14 years ago)
by duarte:
Initial commit: script to make aglappe project into one compiled jar
|
|
makeNbhTbl.java
|
24
(16 years ago)
by stehr:
moved executables (classes with main function) to root directory
|
|
maxInfoGain.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
minInfoGain.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
reconstruct.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
rewriteNBHood.java
|
299
(14 years ago)
by lappe:
only one out of both BB/SC insertion per moves based
on sc/bb domin. out of temp shell
|
|
rewriteNBHood_parallel.java
|
291
(14 years ago)
by lappe:
1st version scoring with pdb_reps_graph_4_2 and full nbhood string
|
|
runGenDbGraph.sh
|
395
(14 years ago)
by duarte:
Initial commit. Provisional script to use the genDbGraph program when iterating through loads of structures, because of the "memory leak" problem is not possible to use directly genDbGraph to iterate over many structures (~1000)
|
|
scoreTargetMoves.java
|
390
(14 years ago)
by duarte:
Not creating anymore the score table
|
|
testClusterConnection.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testDeltaDistanceMap.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
testGraph2Pml.java
|
116
(15 years ago)
by filippis:
testGraph2Pml.java fixed according to changes made in Msdsd2Pdb.java
|
|
testGraphClustering.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
testMySQLConnection.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testPdb.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
testPyMol.java
|
114
(15 years ago)
by duarte:
Initial commit. PyMol API script example, also using our PymolServerOutputStream to send commands directly to server
|
|
testPymolServer.java
|
203
(14 years ago)
by duarte:
Using apache xmlrpc version 3.0 in PyMolServerOutputStream
|
|
testResidueSelectionString.java
|
351
(14 years ago)
by stehr:
added some test programs to default package
|
|
writeTargetMoves.java
|
313
(14 years ago)
by lappe:
short form to compress nbstrings = condense multiple occurence of a symbol in the nbhstring to 1. Still a bitz buggy. sometimes 2 symbols are left in ?
|
