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r1070
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reconstruct/ 992 (11 years ago) by jmduarteg: Removed unneeded code
jars/ 1040 (11 years ago) by jmduarteg: New UniprotConnection taken from Henning's structural impact project (lots of new jar dependencies with that). New EmblWSDBFetchConnection class to get sequences from EMBL web services.
scripts/ 1053 (11 years ago) by jmduarteg: New script to maintain a local copy of blastable uniprot sequences db.
src/ 1070 (11 years ago) by jmduarteg: Fixed bug in TcoffeeRunner. The t_coffee process was hanging after spawning. This didn't happen before, it can be related to the version of t_coffee (I'm using 8.14). Basically t_coffee seems to be doing something weird with stderr and stdout, java doesn't like it and makes the process hang (as usual java has a lot of problems in this area, see StreamGobbler class). The way to solve it is use the -quiet switch of t_coffee that can be used to redirect output to a file or have a complete quiet terminal.
Manifest.txt 968 (11 years ago) by duarte: Updated make-aglappe script (and renamed to make-owl). Changed aglappe strings to OWL (following new name of library)
gpl.txt 974 (11 years ago) by duarte: Adding license files
LICENSE 974 (11 years ago) by duarte: Adding license files
.project 1065 (11 years ago) by hstehr: reverting changes to .project and .classpath which were accidentally committed
.classpath 1065 (11 years ago) by hstehr: reverting changes to .project and .classpath which were accidentally committed
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svn:ignore .classpath .project .settings