 ../
|
tools/
|
203
(14 years ago)
by duarte:
Using apache xmlrpc version 3.0 in PyMolServerOutputStream
|
|
sadp/
|
316
(14 years ago)
by lpetzo:
initial version of sadp
|
|
proteinstructure/
|
337
(14 years ago)
by stehr:
Added two new constructors for Graph (sequence only and no parameters), changed interface of GraphAverager (pass target sequence instead of target graph), extracted constant DEFAULT_WEIGHT in Edge.
|
|
tinker/
|
338
(14 years ago)
by duarte:
Initial commit of reconstruct script. Works only sometimes!! Some others doesn't run distgeom without apparent reason!
Throwing less exceptions in ConstraintsMaker
|
makeNbhTbl.java
|
24
(16 years ago)
by stehr:
moved executables (classes with main function) to root directory
|
|
testPyMol.java
|
114
(15 years ago)
by duarte:
Initial commit. PyMol API script example, also using our PymolServerOutputStream to send commands directly to server
|
|
testGraph2Pml.java
|
116
(15 years ago)
by filippis:
testGraph2Pml.java fixed according to changes made in Msdsd2Pdb.java
|
|
iterateNbhood.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testClusterConnection.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
minInfoGain.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testMySQLConnection.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
listInfoGain.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateUpperNbhood.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
listInfoLoss.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
maxInfoGain.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateNbs.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testPymolServer.java
|
203
(14 years ago)
by duarte:
Using apache xmlrpc version 3.0 in PyMolServerOutputStream
|
|
testPdb.java
|
215
(14 years ago)
by stehr:
some clean up of exceptions in Pdb and Graph classes:
merged PdbAcCodeNotFoundError and MsdAcCodeNotFoundError into PdbCodeNotFoundError,
created new PdbChainCodeNotFound, got rid of stderr output, throwing exceptions with informative messages instead
|
|
compareCMs.java
|
215
(14 years ago)
by stehr:
some clean up of exceptions in Pdb and Graph classes:
merged PdbAcCodeNotFoundError and MsdAcCodeNotFoundError into PdbCodeNotFoundError,
created new PdbChainCodeNotFound, got rid of stderr output, throwing exceptions with informative messages instead
|
|
benchmarkGraphAlgorithm.java
|
254
(14 years ago)
by duarte:
Also writing graph to file
|
|
cnex1.java
|
265
(14 years ago)
by lappe:
final version
incl. pessimistic tie-break
|
|
cnHashIterNbhood.java
|
266
(14 years ago)
by lappe:
|
|
hashIterNbhood.java
|
267
(14 years ago)
by lappe:
|
|
iterateUpperNbs.java
|
268
(14 years ago)
by lappe:
|
|
iterEvalNbhood.java
|
269
(14 years ago)
by lappe:
|
|
cnEvalTargetNbhood.java
|
271
(14 years ago)
by lappe:
|
|
cnCoarseNbhood.java
|
272
(14 years ago)
by lappe:
|
|
genGraph.java
|
285
(14 years ago)
by duarte:
Fixed a few bugs in reading of list file
Better output and error messages
|
|
genDbGraph.java
|
285
(14 years ago)
by duarte:
Fixed a few bugs in reading of list file
Better output and error messages
|
|
rewriteNBHood_parallel.java
|
291
(14 years ago)
by lappe:
1st version scoring with pdb_reps_graph_4_2 and full nbhood string
|
|
rewriteNBHood.java
|
299
(14 years ago)
by lappe:
only one out of both BB/SC insertion per moves based
on sc/bb domin. out of temp shell
|
|
calculateGridDensity.java
|
303
(14 years ago)
by stehr:
added writeResultsToFile()
|
|
scoreTargetMoves.java
|
312
(14 years ago)
by lappe:
|
|
writeTargetMoves.java
|
313
(14 years ago)
by lappe:
short form to compress nbstrings = condense multiple occurence of a symbol in the nbhstring to 1. Still a bitz buggy. sometimes 2 symbols are left in ?
|
|
Manifest.txt
|
321
(14 years ago)
by stehr:
added test program for difference distance maps, updated Manifest to v0.8.5
|
|
testDeltaDistanceMap.java
|
327
(14 years ago)
by stehr:
fixed missing references to constants in class AA
|
|
reconstruct.java
|
338
(14 years ago)
by duarte:
Initial commit of reconstruct script. Works only sometimes!! Some others doesn't run distgeom without apparent reason!
Throwing less exceptions in ConstraintsMaker
|
