 ../
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proteinstructure/
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466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
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actionTools/
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466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
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tinker/
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466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
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sadp/
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446
(14 years ago)
by lpetzo:
Johannes provided us we the debugged version of noncrossing(), kept the old version for sentimental reason as noncrossing_()
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tools/
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381
(14 years ago)
by lpetzo:
a generic pair class
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reconstruct.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
genGraph.java
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466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
benchmarkGraphAlgorithm.java
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466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
testPdb.java
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466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
genDbGraph.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
testGraphClustering.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
testDeltaDistanceMap.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
calculateGridDensity.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
compareCMs.java
|
466
(14 years ago)
by lpetzo:
MAJOR CHANGES:
- merge the changes from the jung-branch: *Pdb loading scheme together with new methods getChains(), getModels()
- different exceptions
|
|
Manifest.txt
|
439
(14 years ago)
by duarte:
Updated version in Manifest for tagging
|
|
make-aglappe.sh
|
432
(14 years ago)
by duarte:
Initial commit: script to make aglappe project into one compiled jar
|
|
createGraphDb.sh
|
413
(14 years ago)
by filippis:
createGraphDb.sh
-pchain_code is now modified to VARCHAR(2) from CHAR(1) due to pdbase_chain_code
-index for pdb_residue_info table added
|
|
runGenDbGraph.sh
|
395
(14 years ago)
by duarte:
Initial commit. Provisional script to use the genDbGraph program when iterating through loads of structures, because of the "memory leak" problem is not possible to use directly genDbGraph to iterate over many structures (~1000)
|
|
scoreTargetMoves.java
|
390
(14 years ago)
by duarte:
Not creating anymore the score table
|
|
testResidueSelectionString.java
|
351
(14 years ago)
by stehr:
added some test programs to default package
|
|
writeTargetMoves.java
|
313
(14 years ago)
by lappe:
short form to compress nbstrings = condense multiple occurence of a symbol in the nbhstring to 1. Still a bitz buggy. sometimes 2 symbols are left in ?
|
|
rewriteNBHood.java
|
299
(14 years ago)
by lappe:
only one out of both BB/SC insertion per moves based
on sc/bb domin. out of temp shell
|
|
rewriteNBHood_parallel.java
|
291
(14 years ago)
by lappe:
1st version scoring with pdb_reps_graph_4_2 and full nbhood string
|
|
cnCoarseNbhood.java
|
272
(14 years ago)
by lappe:
|
|
cnEvalTargetNbhood.java
|
271
(14 years ago)
by lappe:
|
|
iterEvalNbhood.java
|
269
(14 years ago)
by lappe:
|
|
iterateUpperNbs.java
|
268
(14 years ago)
by lappe:
|
|
hashIterNbhood.java
|
267
(14 years ago)
by lappe:
|
|
cnHashIterNbhood.java
|
266
(14 years ago)
by lappe:
|
|
cnex1.java
|
265
(14 years ago)
by lappe:
final version
incl. pessimistic tie-break
|
|
testPymolServer.java
|
203
(14 years ago)
by duarte:
Using apache xmlrpc version 3.0 in PyMolServerOutputStream
|
|
iterateNbhood.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testClusterConnection.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testMySQLConnection.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
listInfoGain.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateUpperNbhood.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
listInfoLoss.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
maxInfoGain.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
minInfoGain.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
iterateNbs.java
|
202
(14 years ago)
by duarte:
MySQLConnection now throwing SQLException on connect
Many files changed following this: all calling classes now re-throwing or catching the SQLException
|
|
testGraph2Pml.java
|
116
(15 years ago)
by filippis:
testGraph2Pml.java fixed according to changes made in Msdsd2Pdb.java
|
|
testPyMol.java
|
114
(15 years ago)
by duarte:
Initial commit. PyMol API script example, also using our PymolServerOutputStream to send commands directly to server
|
|
makeNbhTbl.java
|
24
(16 years ago)
by stehr:
moved executables (classes with main function) to root directory
|
