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r936
File Last Change (rev)
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contactmaps/ 936 (11 years ago) by gmueller: fields changed to private
Reconstructer.java 933 (11 years ago) by gmueller: some methods modifiers were changed from protected to public, since classes of the sub package rely on those
Distiller.java 933 (11 years ago) by gmueller: some methods modifiers were changed from protected to public, since classes of the sub package rely on those
Bound.java 933 (11 years ago) by gmueller: some methods modifiers were changed from protected to public, since classes of the sub package rely on those
Scorer.java 933 (11 years ago) by gmueller: some methods modifiers were changed from protected to public, since classes of the sub package rely on those
Individuals.java 929 (11 years ago) by gmueller: final version, might still contain bugs, but seems consistent so far
NbhStringRanker.java 928 (11 years ago) by gmueller: the older version still had a bug in the setNbhStringMaps(String,String) method
MergeOutPut.java 926 (11 years ago) by gmueller: helper class
Embedder.java 884 (11 years ago) by duarte: Major commit: - change of the implementation of Pdb (interface remains backwards compatible). Now data stored in a proper object-oriented way. Pdb not abstract anymore, a protein model can be created by using one of the constructors - added many tests and test files for Pdb (and merged some already existing tests from the default package) - removed obsolete classes related to msd - bug fix: PdbfilePdb now properly reads files with alt codes - all tests passed
CorrelationFunction.java 860 (12 years ago) by gmueller: class to estimate the correlation function to a given error function, deals onlz with Population arrays
Population.java 858 (12 years ago) by gmueller: new class to deal with arrays of Individuals class, provides methods to generate new arrays of Individuals
BoundsSmoother.java 855 (12 years ago) by gmueller: new class for some evolution
SetScore.java 835 (12 years ago) by duarte: Changed scoring: from sum(upi-ui)2 to sum of max(0,upi-ui). New methods to write subsets to files in table (tab delimited) format. Now main() writes out all scores/subsets to two files instead of only outputting best, worse and ensemble of bests. Moved ScoreSet to its own file, new static methods to read subsets from db.
(Current path doesn't exist after revision 950)
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