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Added drmaa.jar to make file
set javaversion to 1.5 for compatibility with cluster
Fixed xmlrpc library dependencies (was still pointing to old ones)
Switching to JUNG2-beta1: - got rid of our custom fix to removeEdge - now both addVertex and removeVertex are correctly implemented: they update properly the nodes2serials map.
Added some missing packages to compilation
Now compiling also scripts in default package
updated classpath in makefile, changed permissions to execute by all
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