| 10 |
|
tempdir=$1 |
| 11 |
|
aglappetag=$2 |
| 12 |
|
|
| 13 |
< |
CLASSPATH=.:/project/StruPPi/jars/mysql-connector-java.jar:/project/StruPPi/jars/JRclient-RE817.jar:/project/StruPPi/jars/java-getopt-1.0.13.jar:/project/StruPPi/jars/junit-3.8.1.jar:/project/StruPPi/jars/commons-codec-1.3.jar:/project/StruPPi/jars/xmlrpc-client-3.0.jar:/project/StruPPi/jars/xmlrpc-common-3.0.jar:/project/StruPPi/jars/ws-commons-util-1.0.1.jar:/project/StruPPi/jars/vecmath.jar:/project/StruPPi/jars/Jama-1.0.2.jar:/project/StruPPi/jars/jaligner.jar |
| 13 |
> |
# compile with Java5 to keep it backward compatible |
| 14 |
> |
JAVAVERSION=1.5.0 |
| 15 |
> |
|
| 16 |
> |
CLASSPATH=.:/project/StruPPi/jars/mysql-connector-java.jar:\ |
| 17 |
> |
/project/StruPPi/jars/JRclient-RE817.jar:\ |
| 18 |
> |
/project/StruPPi/jars/java-getopt-1.0.13.jar:\ |
| 19 |
> |
/project/StruPPi/jars/junit-3.8.1.jar:\ |
| 20 |
> |
/project/StruPPi/jars/commons-codec-1.3.jar:\ |
| 21 |
> |
/project/StruPPi/jars/xmlrpc-client-3.1.jar:\ |
| 22 |
> |
/project/StruPPi/jars/xmlrpc-common-3.1.jar:\ |
| 23 |
> |
/project/StruPPi/jars/ws-commons-util-1.0.2.jar:\ |
| 24 |
> |
/project/StruPPi/jars/vecmath.jar:\ |
| 25 |
> |
/project/StruPPi/jars/Jama-1.0.2.jar:\ |
| 26 |
> |
/project/StruPPi/jars/jaligner.jar:\ |
| 27 |
> |
/project/StruPPi/jars/jung/collections-generic-4.01.jar:\ |
| 28 |
> |
/project/StruPPi/jars/jung/jung-api-2.0-beta1.jar:\ |
| 29 |
> |
/project/StruPPi/jars/jung/jung-graph-impl-2.0-beta1.jar:\ |
| 30 |
> |
/project/StruPPi/jars/jung/jung-algorithms-2.0-beta1.jar:\ |
| 31 |
> |
/project/StruPPi/jars/drmaa.jar |
| 32 |
|
|
| 33 |
|
cd $tempdir |
| 34 |
|
|
| 54 |
|
# compiling |
| 55 |
|
echo "Compiling..." |
| 56 |
|
cd $aglappetag |
| 57 |
< |
javac proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java |
| 57 |
> |
javac *.java proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java sequence/*.java actionTools/*.java ppi/*.java |
| 58 |
|
|
| 59 |
|
# creating jar file |
| 60 |
|
echo "Creating jar file: $aglappetag.jar ..." |
