--- trunk/make-aglappe.sh	2008/02/13 11:33:26	534
+++ trunk/make-aglappe.sh	2008/04/11 14:57:25	591
@@ -36,7 +36,7 @@
 # compiling
 echo "Compiling..."
 cd $aglappetag
-javac *.java proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java
+javac *.java proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java sequence/*.java actionTools/*.java ppi/*.java
 
 # creating jar file
 echo "Creating jar file: $aglappetag.jar ..."