| 10 |
|
tempdir=$1 |
| 11 |
|
aglappetag=$2 |
| 12 |
|
|
| 13 |
< |
CLASSPATH=.:/project/StruPPi/jars/mysql-connector-java.jar:/project/StruPPi/jars/JRclient-RE817.jar:/project/StruPPi/jars/java-getopt-1.0.13.jar:/project/StruPPi/jars/junit-3.8.1.jar:/project/StruPPi/jars/commons-codec-1.3.jar:/project/StruPPi/jars/xmlrpc-client-3.0.jar:/project/StruPPi/jars/xmlrpc-common-3.0.jar:/project/StruPPi/jars/ws-commons-util-1.0.1.jar:/project/StruPPi/jars/vecmath.jar:/project/StruPPi/jars/Jama-1.0.2.jar:/project/StruPPi/jars/jaligner.jar |
| 13 |
> |
CLASSPATH=.:/project/StruPPi/jars/mysql-connector-java.jar:/project/StruPPi/jars/JRclient-RE817.jar:/project/StruPPi/jars/java-getopt-1.0.13.jar:/project/StruPPi/jars/junit-3.8.1.jar:/project/StruPPi/jars/commons-codec-1.3.jar:/project/StruPPi/jars/xmlrpc-client-3.0.jar:/project/StruPPi/jars/xmlrpc-common-3.0.jar:/project/StruPPi/jars/ws-commons-util-1.0.1.jar:/project/StruPPi/jars/vecmath.jar:/project/StruPPi/jars/Jama-1.0.2.jar:/project/StruPPi/jars/jaligner.jar:/project/StruPPi/jars/jung/collections-generic-4.01.jar:/project/StruPPi/jars/jung/jung-api-2.0-alpha2.jar:/project/StruPPi/jars/jung/jung-graph-impl-2.0-alpha2.jar |
| 14 |
|
|
| 15 |
|
cd $tempdir |
| 16 |
|
|
| 36 |
|
# compiling |
| 37 |
|
echo "Compiling..." |
| 38 |
|
cd $aglappetag |
| 39 |
< |
javac proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java |
| 39 |
> |
javac *.java proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java sequence/*.java actionTools/*.java ppi/*.java |
| 40 |
|
|
| 41 |
|
# creating jar file |
| 42 |
|
echo "Creating jar file: $aglappetag.jar ..." |
