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#!/bin/sh |
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if [ -z "$2" ] |
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if [ -z "$3" ] |
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then |
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echo "usage: make-aglappe.sh <tempdir> <aglappetag>" |
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echo "if instead of a tag, you want the code from trunk, just specify 'trunk' instead of the tag name" |
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echo "Usage: make-owl.sh <svn base url> <tempdir> <tag>" |
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echo "If instead of a tag, you want the code from trunk, just specify 'trunk' instead of the tag name" |
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echo "e.g. for svn base url: svn://black/aglappe or svn://www.bioinformatics.org/svnroot/owl" |
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exit |
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fi |
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svnbaseurl=$1 |
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tempdir=$2 |
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tag=$3 |
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|
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echo "Compiling with:" |
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javac -version |
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echo "" |
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|
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tempdir=$1 |
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aglappetag=$2 |
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# compile with Java5 to keep it backward compatible |
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JAVAVERSION=1.5.0 |
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|
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CLASSPATH=.:/project/StruPPi/jars/mysql-connector-java.jar:\ |
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CLASSPATH=.:\ |
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/project/StruPPi/jars/mysql-connector-java.jar:\ |
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/project/StruPPi/jars/JRclient-RE817.jar:\ |
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/project/StruPPi/jars/java-getopt-1.0.13.jar:\ |
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/project/StruPPi/jars/junit-3.8.1.jar:\ |
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/project/StruPPi/jars/vecmath.jar:\ |
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/project/StruPPi/jars/Jama-1.0.2.jar:\ |
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/project/StruPPi/jars/jaligner.jar:\ |
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/project/StruPPi/jars/drmaa.jar:\ |
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/project/StruPPi/jars/jung/collections-generic-4.01.jar:\ |
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/project/StruPPi/jars/jung/jung-api-2.0-beta1.jar:\ |
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/project/StruPPi/jars/jung/jung-graph-impl-2.0-beta1.jar:\ |
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/project/StruPPi/jars/jung/jung-algorithms-2.0-beta1.jar:\ |
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/project/StruPPi/jars/drmaa.jar |
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/project/StruPPi/jars/jung/jung-2.0.1/jung-api-2.0.1.jar:\ |
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/project/StruPPi/jars/jung/jung-2.0.1/jung-graph-impl-2.0.1.jar:\ |
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/project/StruPPi/jars/jung/jung-2.0.1/jung-algorithms-2.0.1.jar |
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cd $tempdir |
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if [ -e "$aglappetag" ] |
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if [ -e "$tag" ] |
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then |
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echo "File exists with name $cmviewtag or name $aglappetag, can't create directory" |
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echo "File exists with name $tag, can't create directory" |
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exit 1 |
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fi |
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echo "Exporting source from svn" |
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if [ "$aglappetag" = "trunk" ] |
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if [ "$tag" = "trunk" ] |
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then |
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aglappetag="aglappe-trunk" |
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svn export file:///project/StruPPi/svn/aglappe/trunk/ $aglappetag |
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tag="owl-trunk" |
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svn export $svnbaseurl/trunk/ $tag |
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else |
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svn export file:///project/StruPPi/svn/aglappe/tags/$aglappetag |
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svn export $svnbaseurl/tags/$tag |
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fi |
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# compiling |
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echo "Compiling..." |
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cd $aglappetag |
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cd $tag/src |
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javac *.java proteinstructure/*.java tools/*.java tinker/*.java sadp/*.java sequence/*.java actionTools/*.java ppi/*.java |
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# creating jar file |
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echo "Creating jar file: $aglappetag.jar ..." |
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jar -cfm ../$aglappetag.jar Manifest.txt . |
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echo "Creating jar file: $tag.jar ..." |
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jar -cfm ../../$tag.jar ../Manifest.txt . |
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# removing $aglappetag temp directory |
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cd .. |
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rm -rf $aglappetag |
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# removing $tag temp directory |
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cd ../.. |
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rm -rf $tag |
