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r618
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BlastError.java 577 (13 years ago) by duarte: New package sequence. Initial commit of classes to run blast and parse its output.
BlastTabularParser.java 577 (13 years ago) by duarte: New package sequence. Initial commit of classes to run blast and parse its output.
BlastHit.java 589 (13 years ago) by duarte: New classes Template, TemplateList to be used in homology modelling pipeline. Modified BlastUtils to use TemplateList class
PsipredError.java 590 (13 years ago) by duarte: Added code to run psipred. Fixed a few minor bugs.
PsipredRunner.java 590 (13 years ago) by duarte: Added code to run psipred. Fixed a few minor bugs.
BlastRunner.java 593 (13 years ago) by stehr: merged in some changes (now writing similarity matrix in blast utils)
BlastUtils.java 593 (13 years ago) by stehr: merged in some changes (now writing similarity matrix in blast utils)
Sequence.java 612 (13 years ago) by duarte: Now checking wheter read sequence contains spaces and throwing FastaFileFormatError
GTGHitList.java 618 (13 years ago) by duarte: Initial commit of GTG parsing classes. Added method in PdbasePdb to map observed residue sequence serials to internal (cif) residue serials
GTGHit.java 618 (13 years ago) by duarte: Initial commit of GTG parsing classes. Added method in PdbasePdb to map observed residue sequence serials to internal (cif) residue serials
BlastHitList.java 618 (13 years ago) by duarte: Initial commit of GTG parsing classes. Added method in PdbasePdb to map observed residue sequence serials to internal (cif) residue serials
GTGParser.java 618 (13 years ago) by duarte: Initial commit of GTG parsing classes. Added method in PdbasePdb to map observed residue sequence serials to internal (cif) residue serials
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