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r619
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BlastError.java 577 (13 years ago) by duarte: New package sequence. Initial commit of classes to run blast and parse its output.
BlastTabularParser.java 577 (13 years ago) by duarte: New package sequence. Initial commit of classes to run blast and parse its output.
PsipredError.java 590 (13 years ago) by duarte: Added code to run psipred. Fixed a few minor bugs.
PsipredRunner.java 590 (13 years ago) by duarte: Added code to run psipred. Fixed a few minor bugs.
BlastRunner.java 593 (13 years ago) by stehr: merged in some changes (now writing similarity matrix in blast utils)
BlastUtils.java 593 (13 years ago) by stehr: merged in some changes (now writing similarity matrix in blast utils)
Sequence.java 612 (13 years ago) by duarte: Now checking wheter read sequence contains spaces and throwing FastaFileFormatError
BlastHitList.java 618 (13 years ago) by duarte: Initial commit of GTG parsing classes. Added method in PdbasePdb to map observed residue sequence serials to internal (cif) residue serials
GTGHitList.java 619 (13 years ago) by duarte: Added methods to be able to print "graphical" output for GTGHits, all equivalent to the methods in BlastHit Added compare() and writeIdsToFile() in TemplateList.
BlastHit.java 619 (13 years ago) by duarte: Added methods to be able to print "graphical" output for GTGHits, all equivalent to the methods in BlastHit Added compare() and writeIdsToFile() in TemplateList.
GTGHit.java 619 (13 years ago) by duarte: Added methods to be able to print "graphical" output for GTGHits, all equivalent to the methods in BlastHit Added compare() and writeIdsToFile() in TemplateList.
GTGParser.java 619 (13 years ago) by duarte: Added methods to be able to print "graphical" output for GTGHits, all equivalent to the methods in BlastHit Added compare() and writeIdsToFile() in TemplateList.
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