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r1704
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litNet/ 1007 (11 years ago) by hstehr: refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
ppi/ 1007 (11 years ago) by hstehr: refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl
sadp/ 1305 (10 years ago) by jmduarteg: Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
deltaRank/ 1314 (10 years ago) by jmduarteg: Finally got rid of all duplicated amino acid methods in AAinfo. Now everything unified in AminoAcid enum.
gmbp/ 1392 (10 years ago) by jmduarteg: MAJOR CHANGE: now able to read and treat properly HETATMS and nucleotides from PDB entries. All tests pass. Anyway surely there will be some bugs to iron out still.
graphAveraging/ 1698 (7 years ago) by jmduarteg: Important change: removed PDBASE support. The PDBASE database is difficult to create plus there's no support for it whatsover, additionally the code was already obsolete for PDBASE reading. Now all instances of PDBASE loading have been converted to mmCIF file loading. Additionally: massive clean-up of obsolete classes.
cccp/ 1698 (7 years ago) by jmduarteg: Important change: removed PDBASE support. The PDBASE database is difficult to create plus there's no support for it whatsover, additionally the code was already obsolete for PDBASE reading. Now all instances of PDBASE loading have been converted to mmCIF file loading. Additionally: massive clean-up of obsolete classes.
casp/ 1698 (7 years ago) by jmduarteg: Important change: removed PDBASE support. The PDBASE database is difficult to create plus there's no support for it whatsover, additionally the code was already obsolete for PDBASE reading. Now all instances of PDBASE loading have been converted to mmCIF file loading. Additionally: massive clean-up of obsolete classes.
decoyScoring/ 1698 (7 years ago) by jmduarteg: Important change: removed PDBASE support. The PDBASE database is difficult to create plus there's no support for it whatsover, additionally the code was already obsolete for PDBASE reading. Now all instances of PDBASE loading have been converted to mmCIF file loading. Additionally: massive clean-up of obsolete classes.
mutanom/ 1699 (7 years ago) by jmduarteg: Removing some more obsolete stuff after removal of PDBASE support
embed/ 1699 (7 years ago) by jmduarteg: Removing some more obsolete stuff after removal of PDBASE support
core/ 1704 (7 years ago) by jmduarteg: Fixed bug in cif file parsing: was not tokenising correctly loop elements that had more multi-line quoting mixed with normal quoted fields and several records. Added one more test case for that.
tests/ 1704 (7 years ago) by jmduarteg: Fixed bug in cif file parsing: was not tokenising correctly loop elements that had more multi-line quoting mixed with normal quoted fields and several records. Added one more test case for that.
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