Revision 1187 - Directory Listing
Modified Wed Aug 11 14:46:34 2010 UTC (11 years, 9 months ago) by cvehlow

Implementation of class for Check for Correctness of Casp server model files

Revision 1186 - Directory Listing
Modified Wed Aug 11 14:28:33 2010 UTC (11 years, 9 months ago) by cvehlow

max Cluster Path two possibilities (Mac Unix)

Revision 1185 - Directory Listing
Modified Wed Aug 11 13:34:13 2010 UTC (11 years, 9 months ago) by cvehlow

Method added which returns complete result in TreeMap

Revision 1173 - Directory Listing
Modified Wed Aug 4 15:27:40 2010 UTC (11 years, 9 months ago) by hstehr

minor modifications to casp benchmarking script

Revision 1171 - Directory Listing
Modified Wed Aug 4 10:47:28 2010 UTC (11 years, 9 months ago) by hstehr

small update for compatibility with Casp9 data (changing baker group name string)

Revision 1169 - Directory Listing
Modified Mon Aug 2 17:29:07 2010 UTC (11 years, 9 months ago) by hstehr

some more fixes for doing benchmarking on Casp9 targets

Revision 1167 - Directory Listing
Modified Mon Aug 2 14:42:36 2010 UTC (11 years, 9 months ago) by hstehr

updated casp benchmarking classes for Casp9, still missing: update group suffix

Revision 1070 - Directory Listing
Modified Wed May 19 16:20:42 2010 UTC (11 years, 11 months ago) by jmduarteg

Fixed bug in TcoffeeRunner. The t_coffee process was hanging after spawning. This didn't happen before, it can be related to the version of t_coffee (I'm using 8.14). Basically t_coffee seems to be doing something weird with stderr and stdout, java doesn't like it and makes the process hang (as usual java has a lot of problems in this area, see StreamGobbler class). The way to solve it is use the -quiet switch of t_coffee that can be used to redirect output to a file or have a complete quiet terminal.

Revision 1009 - Directory Listing
Modified Wed Mar 31 15:50:04 2010 UTC (12 years, 1 month ago) by hstehr

refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features

Revision 1007 - Directory Listing
Added Wed Mar 31 13:27:18 2010 UTC (12 years, 1 month ago) by hstehr

refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl