Revision 1223 - Directory Listing
Modified Wed Sep 1 14:26:00 2010 UTC (11 years, 9 months ago) by hstehr

updated classes for evaluating our CASP predictions

Revision 1222 - Directory Listing
Modified Wed Sep 1 14:23:40 2010 UTC (11 years, 9 months ago) by hstehr

please don't check in Mac specific constants

Revision 1221 - Directory Listing
Modified Wed Sep 1 14:21:58 2010 UTC (11 years, 9 months ago) by hstehr

updating annotations to get rid of warnings

Revision 1208 - Directory Listing
Modified Mon Aug 23 12:09:34 2010 UTC (11 years, 10 months ago) by cvehlow

Scoring:KendallsTau-method added to  Statistics

Revision 1203 - Directory Listing
Modified Thu Aug 19 10:52:46 2010 UTC (11 years, 10 months ago) by hstehr

renamed class benchmarkAll to createResultWebPages

Revision 1200 - Directory Listing
Modified Thu Aug 19 10:16:06 2010 UTC (11 years, 10 months ago) by hstehr

removed some bad characters

Revision 1196 - Directory Listing
Modified Thu Aug 19 10:06:15 2010 UTC (11 years, 10 months ago) by hstehr

new class for scoring all casp7/casp8/casp9 server models in terms of GDT_TS and Acc/Cov of the contact map

Revision 1187 - Directory Listing
Modified Wed Aug 11 14:46:34 2010 UTC (11 years, 10 months ago) by cvehlow

Implementation of class for Check for Correctness of Casp server model files

Revision 1186 - Directory Listing
Modified Wed Aug 11 14:28:33 2010 UTC (11 years, 10 months ago) by cvehlow

max Cluster Path two possibilities (Mac Unix)

Revision 1185 - Directory Listing
Modified Wed Aug 11 13:34:13 2010 UTC (11 years, 10 months ago) by cvehlow

Method added which returns complete result in TreeMap

Revision 1173 - Directory Listing
Modified Wed Aug 4 15:27:40 2010 UTC (11 years, 10 months ago) by hstehr

minor modifications to casp benchmarking script

Revision 1171 - Directory Listing
Modified Wed Aug 4 10:47:28 2010 UTC (11 years, 10 months ago) by hstehr

small update for compatibility with Casp9 data (changing baker group name string)

Revision 1169 - Directory Listing
Modified Mon Aug 2 17:29:07 2010 UTC (11 years, 10 months ago) by hstehr

some more fixes for doing benchmarking on Casp9 targets

Revision 1167 - Directory Listing
Modified Mon Aug 2 14:42:36 2010 UTC (11 years, 10 months ago) by hstehr

updated casp benchmarking classes for Casp9, still missing: update group suffix

Revision 1070 - Directory Listing
Modified Wed May 19 16:20:42 2010 UTC (12 years, 1 month ago) by jmduarteg

Fixed bug in TcoffeeRunner. The t_coffee process was hanging after spawning. This didn't happen before, it can be related to the version of t_coffee (I'm using 8.14). Basically t_coffee seems to be doing something weird with stderr and stdout, java doesn't like it and makes the process hang (as usual java has a lot of problems in this area, see StreamGobbler class). The way to solve it is use the -quiet switch of t_coffee that can be used to redirect output to a file or have a complete quiet terminal.

Revision 1009 - Directory Listing
Modified Wed Mar 31 15:50:04 2010 UTC (12 years, 2 months ago) by hstehr

refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features

Revision 1007 - Directory Listing
Added Wed Mar 31 13:27:18 2010 UTC (12 years, 2 months ago) by hstehr

refactoring: moved casp, deltaRank, embed, graphAveraging, ppi, sadp to owl