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File Last Change
connections/ 1101 (12 years ago) by jmduarteg: Now serializable (to be able to write them to file)
features/ 1049 (12 years ago) by hstehr: removing @Override annotations which were causing compilation errors for me
runners/ 1097 (12 years ago) by jmduarteg: Now explicitely specifying output dnd file in tcoffee so it can be removed by the calling program.
sequence/ 1098 (12 years ago) by jmduarteg: Fixed bug: was nullpointing at retrieveUniprotKBData because of a single uniprot id can have multiple blast hits and was using the uni ids as unique identifiers => the lookup map was failing. Now the lookup map is from uniIds to lists of homologs(hits)
structure/ 1094 (12 years ago) by jmduarteg: Implemented reduced alphabets in AminoAcid class and modified entropy calculation to allow reduced alphabets.
util/ 1042 (12 years ago) by jmduarteg: New SiftsConnection and SiftsFeature classes for SIFTS pdb to uniprot mapping. Implemented the HasFeatures interface in Pdb. In the future we can hopefully use that mechanism for all features (sec. strucuture, scop and so on)
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