 ../
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connections/
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1147
(12 years ago)
by jmduarteg:
Implemented logging with log4j library
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features/
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1049
(12 years ago)
by hstehr:
removing @Override annotations which were causing compilation errors for me
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runners/
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1132
(12 years ago)
by jmduarteg:
New SelectonRunner class. More taxonomy information retrieved from uniprot.
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sequence/
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1168
(11 years ago)
by jmduarteg:
Now catching the case when the best translation contains stop codons. This is usually due to a wrong genetic code, but for the moment it's still very difficult to know the genetic code from encoding organelle+organism taxonomy, so this is the temporary solution.
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structure/
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1165
(11 years ago)
by cvehlow:
HahpMap keytype changed to Pair instead of String
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util/
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1119
(12 years ago)
by jmduarteg:
Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
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