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File (rev) Last Change
util/ 1042 (12 years ago) by jmduarteg: New SiftsConnection and SiftsFeature classes for SIFTS pdb to uniprot mapping. Implemented the HasFeatures interface in Pdb. In the future we can hopefully use that mechanism for all features (sec. strucuture, scop and so on)
structure/ 1094 (12 years ago) by jmduarteg: Implemented reduced alphabets in AminoAcid class and modified entropy calculation to allow reduced alphabets.
sequence/ 1095 (12 years ago) by jmduarteg: Fixed bug: was nullpointing when the letter encountered in counting the column was unknown.
runners/ 1074 (12 years ago) by jmduarteg: Implemented profile counting and entropy calculation for alignment.
features/ 1049 (12 years ago) by hstehr: removing @Override annotations which were causing compilation errors for me
connections/ 1087 (12 years ago) by jmduarteg: Improved the getRimAndCore method
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