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util/ 1042 (12 years ago) by jmduarteg: New SiftsConnection and SiftsFeature classes for SIFTS pdb to uniprot mapping. Implemented the HasFeatures interface in Pdb. In the future we can hopefully use that mechanism for all features (sec. strucuture, scop and so on)
features/ 1049 (12 years ago) by hstehr: removing @Override annotations which were causing compilation errors for me
structure/ 1094 (12 years ago) by jmduarteg: Implemented reduced alphabets in AminoAcid class and modified entropy calculation to allow reduced alphabets.
runners/ 1097 (12 years ago) by jmduarteg: Now explicitely specifying output dnd file in tcoffee so it can be removed by the calling program.
connections/ 1103 (12 years ago) by jmduarteg: Implemented caching for EMBWSDBfetchConnection
sequence/ 1104 (12 years ago) by jmduarteg: Now reading uniprot version from reldate.txt and checking against the uniprot api version
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