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root/owl/trunk/src/owl/core
r1165
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features/ 1049 (11 years ago) by hstehr: removing @Override annotations which were causing compilation errors for me
util/ 1119 (11 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
runners/ 1132 (11 years ago) by jmduarteg: New SelectonRunner class. More taxonomy information retrieved from uniprot.
connections/ 1147 (11 years ago) by jmduarteg: Implemented logging with log4j library
sequence/ 1164 (11 years ago) by jmduarteg: Now returning null for the representative CDS when the gene encoding organelle is not nucleus/plasmid. Before the whole program would stop, which wasn't ideal. Eventually we will need to use the proper genetic code when needed.
structure/ 1165 (11 years ago) by cvehlow: HahpMap keytype changed to Pair instead of String
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