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root/owl/trunk/src/owl/core
r1170
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features/ 1049 (12 years ago) by hstehr: removing @Override annotations which were causing compilation errors for me
util/ 1119 (12 years ago) by jmduarteg: Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
runners/ 1132 (12 years ago) by jmduarteg: New SelectonRunner class. More taxonomy information retrieved from uniprot.
connections/ 1147 (11 years ago) by jmduarteg: Implemented logging with log4j library
sequence/ 1168 (11 years ago) by jmduarteg: Now catching the case when the best translation contains stop codons. This is usually due to a wrong genetic code, but for the moment it's still very difficult to know the genetic code from encoding organelle+organism taxonomy, so this is the temporary solution.
structure/ 1170 (11 years ago) by hstehr: adding secondary structure functions to RIGEnsemble and GraphAverager: GraphAverager can now use DSSP to get consensus secondary structure from underlying structures.
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