 ../
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sequence/
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1166
(11 years ago)
by jmduarteg:
Fixed bug: not allowing anymore the presence of gaps when choosing the representative CDS to uniprot match. Now the nucleotide alignments should be always correct (before they were shifted if there were gaps in CDS-to-uniprot)
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structure/
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1165
(11 years ago)
by cvehlow:
HahpMap keytype changed to Pair instead of String
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connections/
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1147
(11 years ago)
by jmduarteg:
Implemented logging with log4j library
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runners/
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1132
(11 years ago)
by jmduarteg:
New SelectonRunner class. More taxonomy information retrieved from uniprot.
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util/
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1119
(11 years ago)
by jmduarteg:
Now checking also for ambiguous nucleotide codes (n, m) when translating. Changed implementation of translation by using the new Codon class.
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features/
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1049
(12 years ago)
by hstehr:
removing @Override annotations which were causing compilation errors for me
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