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root/owl/trunk/src/owl/core/connections
r1305
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pisa/ 1296 (10 years ago) by jmduarteg: Bringing back the PISA classes for interface, molecule and residues. We store things first into them and only then convert to our own ChainInterface if needed. This is a much better approach less prone to errors. Tests pass.
CSAConnection.java 1034 (11 years ago) by jmduarteg: Extracted Scop parsing code to its own connection class.
ConsurfConnection.java 1005 (11 years ago) by hstehr: refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
ECConnection.java 1035 (11 years ago) by jmduarteg: Extracted the EC data parsing code to its own connection class.
EmblWSDBfetchConnection.java 1266 (10 years ago) by jmduarteg: Now throwing IOException when the server returns an error (happens for example when it is down)
GTGHit.java 1305 (10 years ago) by jmduarteg: Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
GTGHitList.java 1305 (10 years ago) by jmduarteg: Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
GTGParser.java 1305 (10 years ago) by jmduarteg: Renaming all xxxxError named exceptions to xxxxException. Long overdue thing (was historical because it came from python). Learnt just recently that java does have a concept of Error too.
JPredConnection.java 1062 (11 years ago) by stehr: fixed a minor bug in JPredConnection; new method SecondaryStructure.getConsensusSecondaryStructure(); changed visibility of RIGEnsemble.addFile() to public
JPredProgressRetriever.java 1060 (11 years ago) by hstehr: New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
JPredStopNotifier.java 1060 (11 years ago) by hstehr: New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
NoMatchFoundException.java 1040 (11 years ago) by jmduarteg: New UniprotConnection taken from Henning's structural impact project (lots of new jar dependencies with that). New EmblWSDBFetchConnection class to get sequences from EMBL web services.
PDomainsConnection.java 1005 (11 years ago) by hstehr: refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
PhosphoSiteConnection.java 1231 (10 years ago) by hstehr: Adding class PhosphoSiteConnection
PrositeHit.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
PrositeScanner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
ScopConnection.java 1034 (11 years ago) by jmduarteg: Extracted Scop parsing code to its own connection class.
SiftsConnection.java 1226 (10 years ago) by hstehr: Refactoring of SiftsConnection and SiftsFeature, now implementing Uniprot2Pdb
UniProtConnection.java 1234 (10 years ago) by hstehr: New method to get PDB cross refs for a Uniprot entry
UniProtPdbRef.java 1234 (10 years ago) by hstehr: New method to get PDB cross refs for a Uniprot entry
package-info.java 1005 (11 years ago) by hstehr: refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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