 ../
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ConsurfConnection.java
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1005
(11 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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package-info.java
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1005
(11 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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PDomainsConnection.java
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1005
(11 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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PhosphoSitePlusConnection.java
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1005
(11 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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GTGParser.java
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1009
(11 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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GTGHitList.java
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1009
(11 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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PrositeHit.java
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1009
(11 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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GTGHit.java
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1009
(11 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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PrositeScanner.java
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1009
(11 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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ScopConnection.java
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1034
(11 years ago)
by jmduarteg:
Extracted Scop parsing code to its own connection class.
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CSAConnection.java
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1034
(11 years ago)
by jmduarteg:
Extracted Scop parsing code to its own connection class.
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ECConnection.java
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1035
(11 years ago)
by jmduarteg:
Extracted the EC data parsing code to its own connection class.
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NoMatchFoundException.java
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1040
(11 years ago)
by jmduarteg:
New UniprotConnection taken from Henning's structural impact project (lots of new jar dependencies with that). New EmblWSDBFetchConnection class to get sequences from EMBL web services.
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SiftsConnection.java
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1042
(11 years ago)
by jmduarteg:
New SiftsConnection and SiftsFeature classes for SIFTS pdb to uniprot mapping. Implemented the HasFeatures interface in Pdb. In the future we can hopefully use that mechanism for all features (sec. strucuture, scop and so on)
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EmblWSDBfetchConnection.java
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1045
(11 years ago)
by jmduarteg:
Uniprot and embl ws dbfetch connections can now do multiple entries per request. Update to parse also the hit_def tag in blast parser.
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UniProtConnection.java
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1045
(11 years ago)
by jmduarteg:
Uniprot and embl ws dbfetch connections can now do multiple entries per request. Update to parse also the hit_def tag in blast parser.
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JPredConnection.java
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1046
(11 years ago)
by hstehr:
JPredConnection now returns a SecondaryStructure object; some updated javadocs
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