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root/owl/trunk/src/owl/core/connections
r1172
File Last Change
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pisa/ 1108 (11 years ago) by jmduarteg: Now parsing the symmetry operators.
ConsurfConnection.java 1005 (11 years ago) by hstehr: refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
package-info.java 1005 (11 years ago) by hstehr: refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
PDomainsConnection.java 1005 (11 years ago) by hstehr: refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
PhosphoSitePlusConnection.java 1005 (11 years ago) by hstehr: refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
GTGParser.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
GTGHitList.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
PrositeHit.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
GTGHit.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
PrositeScanner.java 1009 (11 years ago) by hstehr: refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
ScopConnection.java 1034 (11 years ago) by jmduarteg: Extracted Scop parsing code to its own connection class.
CSAConnection.java 1034 (11 years ago) by jmduarteg: Extracted Scop parsing code to its own connection class.
ECConnection.java 1035 (11 years ago) by jmduarteg: Extracted the EC data parsing code to its own connection class.
NoMatchFoundException.java 1040 (11 years ago) by jmduarteg: New UniprotConnection taken from Henning's structural impact project (lots of new jar dependencies with that). New EmblWSDBFetchConnection class to get sequences from EMBL web services.
UniProtConnection.java 1045 (11 years ago) by jmduarteg: Uniprot and embl ws dbfetch connections can now do multiple entries per request. Update to parse also the hit_def tag in blast parser.
SiftsConnection.java 1054 (11 years ago) by jmduarteg: Minor changes, couple of new methods.
JPredStopNotifier.java 1060 (11 years ago) by hstehr: New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
JPredProgressRetriever.java 1060 (11 years ago) by hstehr: New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
JPredConnection.java 1062 (11 years ago) by stehr: fixed a minor bug in JPredConnection; new method SecondaryStructure.getConsensusSecondaryStructure(); changed visibility of RIGEnsemble.addFile() to public
EmblWSDBfetchConnection.java 1172 (10 years ago) by jmduarteg: Now using apache commons logging
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