 ../
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pisa/
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1228
(11 years ago)
by jmduarteg:
Now PISA interfaces using same classes as our own calculated interfaces. Removed all Pisa specific classes (except for connector and parser). Introduce new class ChainInterfaceList which also simplifies some things.
PdbAsymUnitTest passes.
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ConsurfConnection.java
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1005
(12 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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package-info.java
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1005
(12 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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PDomainsConnection.java
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1005
(12 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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GTGParser.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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GTGHitList.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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PrositeHit.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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GTGHit.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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PrositeScanner.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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ScopConnection.java
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1034
(12 years ago)
by jmduarteg:
Extracted Scop parsing code to its own connection class.
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CSAConnection.java
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1034
(12 years ago)
by jmduarteg:
Extracted Scop parsing code to its own connection class.
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ECConnection.java
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1035
(12 years ago)
by jmduarteg:
Extracted the EC data parsing code to its own connection class.
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NoMatchFoundException.java
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1040
(12 years ago)
by jmduarteg:
New UniprotConnection taken from Henning's structural impact project (lots of new jar dependencies with that). New EmblWSDBFetchConnection class to get sequences from EMBL web services.
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JPredStopNotifier.java
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1060
(12 years ago)
by hstehr:
New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
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JPredProgressRetriever.java
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1060
(12 years ago)
by hstehr:
New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
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JPredConnection.java
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1062
(12 years ago)
by stehr:
fixed a minor bug in JPredConnection; new method SecondaryStructure.getConsensusSecondaryStructure(); changed visibility of RIGEnsemble.addFile() to public
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EmblWSDBfetchConnection.java
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1172
(11 years ago)
by jmduarteg:
Now using apache commons logging
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SiftsConnection.java
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1226
(11 years ago)
by hstehr:
Refactoring of SiftsConnection and SiftsFeature, now implementing Uniprot2Pdb
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PhosphoSiteConnection.java
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1231
(11 years ago)
by hstehr:
Adding class PhosphoSiteConnection
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UniProtConnection.java
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1232
(11 years ago)
by hstehr:
Merging (yet again) my personal UniProtConnection with owl.core.connections.UniProtConnection; new features: Methods for retrieving cross references for PDB and PhosphoSitePlus
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UniprotPdbRef.java
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1232
(11 years ago)
by hstehr:
Merging (yet again) my personal UniProtConnection with owl.core.connections.UniProtConnection; new features: Methods for retrieving cross references for PDB and PhosphoSitePlus
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