 ../
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pisa/
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1258
(11 years ago)
by jmduarteg:
Fixed bug: now we properly parse from pisa both the orthonormal and the crystal coords operators.
Added a test for SpaceGroup to test for proper parsing of algebraic strings
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ConsurfConnection.java
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1005
(12 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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package-info.java
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1005
(12 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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PDomainsConnection.java
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1005
(12 years ago)
by hstehr:
refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core
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GTGParser.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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GTGHitList.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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PrositeHit.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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GTGHit.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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PrositeScanner.java
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1009
(12 years ago)
by hstehr:
refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features
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ScopConnection.java
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1034
(12 years ago)
by jmduarteg:
Extracted Scop parsing code to its own connection class.
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CSAConnection.java
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1034
(12 years ago)
by jmduarteg:
Extracted Scop parsing code to its own connection class.
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ECConnection.java
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1035
(12 years ago)
by jmduarteg:
Extracted the EC data parsing code to its own connection class.
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NoMatchFoundException.java
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1040
(12 years ago)
by jmduarteg:
New UniprotConnection taken from Henning's structural impact project (lots of new jar dependencies with that). New EmblWSDBFetchConnection class to get sequences from EMBL web services.
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JPredStopNotifier.java
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1060
(12 years ago)
by hstehr:
New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
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JPredProgressRetriever.java
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1060
(12 years ago)
by hstehr:
New helper classes JPredProgressRetriever and JPredNotifier which can be used to run JPredConnection in a thread and notify some GUI component of the progress.
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JPredConnection.java
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1062
(12 years ago)
by stehr:
fixed a minor bug in JPredConnection; new method SecondaryStructure.getConsensusSecondaryStructure(); changed visibility of RIGEnsemble.addFile() to public
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EmblWSDBfetchConnection.java
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1172
(11 years ago)
by jmduarteg:
Now using apache commons logging
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SiftsConnection.java
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1226
(11 years ago)
by hstehr:
Refactoring of SiftsConnection and SiftsFeature, now implementing Uniprot2Pdb
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PhosphoSiteConnection.java
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1231
(11 years ago)
by hstehr:
Adding class PhosphoSiteConnection
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UniProtConnection.java
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1234
(11 years ago)
by hstehr:
New method to get PDB cross refs for a Uniprot entry
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UniProtPdbRef.java
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1234
(11 years ago)
by hstehr:
New method to get PDB cross refs for a Uniprot entry
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