Revision 1049 - Directory Listing
Modified Tue Apr 27 12:36:16 2010 UTC (12 years, 3 months ago) by hstehr

removing @Override annotations which were causing compilation errors for me

Revision 1042 - Directory Listing
Modified Wed Apr 21 16:11:08 2010 UTC (12 years, 3 months ago) by jmduarteg

New SiftsConnection and SiftsFeature classes for SIFTS pdb to uniprot mapping. Implemented the HasFeatures interface in Pdb. In the future we can hopefully use that mechanism for all features (sec. strucuture, scop and so on)

Revision 1036 - Directory Listing
Modified Mon Apr 19 14:27:11 2010 UTC (12 years, 3 months ago) by jmduarteg

Changed return type of addFeature to boolean to match the java Collection interface

Revision 1009 - Directory Listing
Modified Wed Mar 31 15:50:04 2010 UTC (12 years, 4 months ago) by hstehr

refactoring: moved many many classes to more appropriate packages; created new packages owl.core.sequence.alignment, owl.core.structure.alignment, owl.core.structure.features

Revision 1005 - Directory Listing
Modified Wed Mar 31 12:29:26 2010 UTC (12 years, 4 months ago) by hstehr
Copied from: trunk/src/features revision 1002

refactoring: renaming proteinstructure to structure and tools to util; moving connections,features,runners,sequence,structure,util to owl.core

Revision 998 - Directory Listing
Modified Mon Mar 29 10:04:04 2010 UTC (12 years, 4 months ago) by jmduarteg
Original Path: trunk/src/features

Minor refactoring and comment fixes

Revision 981 - Directory Listing
Modified Tue Mar 16 12:53:13 2010 UTC (12 years, 5 months ago) by hstehr
Original Path: trunk/src/features

Introducing new StructuralDomainFeature for structural domains as defined by SCOP, CATH, DomainParser etc.

Revision 958 - Directory Listing
Modified Fri Feb 12 15:22:36 2010 UTC (12 years, 6 months ago) by duarte
Original Path: trunk/src/features

Moved Interval* and IntPair* classes to tools package

Revision 951 - Directory Listing
Modified Fri Jan 29 16:12:34 2010 UTC (12 years, 6 months ago) by duarte
Original Path: trunk/src/features
Copied from: trunk/features revision 949

Reorganised the project with a src folder for java source files.
Added a jars dir with all jars needed for the project.
Added .project and .classpath pointing to relative path of jars. 
The project should now work out of the box after a check-out with eclipse. No need to setup external jars or anything.

Revision 938 - Directory Listing
Modified Tue Jan 5 15:47:39 2010 UTC (12 years, 7 months ago) by stehr
Original Path: trunk/features

fixed bugs in getDescription()

Revision 915 - Directory Listing
Modified Tue Oct 20 12:38:56 2009 UTC (12 years, 9 months ago) by stehr
Original Path: trunk/features

fixed an interesting bug where a recursive function call would lead to a stack overflow exception

Revision 908 - Directory Listing
Modified Wed Sep 30 13:23:13 2009 UTC (12 years, 10 months ago) by stehr
Original Path: trunk/features

new feature type PhosphoSitePlusFeature (for post-translational modifications)

Revision 879 - Directory Listing
Modified Fri Aug 7 13:45:06 2009 UTC (13 years ago) by stehr
Original Path: trunk/features

moving all classes in proteinstructure.features to features

Revision 878 - Directory Listing
Added Fri Aug 7 13:41:45 2009 UTC (13 years ago) by stehr
Original Path: trunk/features

preparing to move package 'proteinstructure.features' to 'features'